Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1607.4 822 100.0
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1182.9 817 74.1
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1175.6 826 73.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1159.1 824 72.2
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1152.5 822 71.5
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1150.2 826 71.5
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1144.0 812 72.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1141.3 838 71.0
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1140.9 826 71.1
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1139.4 836 71.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1138.3 832 71.3
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1137.9 815 70.9
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1136.3 832 70.7
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1135.6 832 70.1
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1134.0 821 71.9
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1133.6 807 72.6
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1127.9 834 69.8
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1127.5 816 71.7
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1121.3 833 70.1
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1120.9 899 66.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1113.6 819 70.3
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1113.6 783 72.3
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1112.1 829 69.5
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1111.3 809 70.5
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1110.5 834 68.9
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1105.5 813 70.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1105.5 808 70.9
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1104.0 829 69.0
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1102.4 827 69.6
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1101.7 834 67.7
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1098.2 839 67.6
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1097.0 938 62.8
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1095.9 828 68.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1095.5 786 71.0
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1094.0 837 67.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1093.2 782 70.7
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1083.9 716 76.5
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1082.8 822 68.5
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1082.4 818 67.8
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1082.4 837 67.1
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1078.5 828 67.4
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 1.1e-311 1072.8 783 69.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 2.8e-311 1071.6 811 67.7
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 2.8e-311 1071.6 836 67.6
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 5.1e-311 1070.8 813 67.8
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 5.1e-311 1070.8 813 67.8
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 6.7e-311 1070.5 809 67.5
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 1.1e-310 1069.7 818 67.8
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 7.3e-310 1067.0 820 66.6
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 3.6e-309 1064.7 784 68.5
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 1.0e-308 1063.1 786 67.4
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 8.9e-308 1060.1 814 67.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.2e-307 1059.7 813 67.2
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.2e-307 1059.7 831 64.5
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 1.5e-307 1059.3 815 67.7
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 5.7e-307 1057.4 778 70.2
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 2.4e-305 1052.0 818 65.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 4.1e-305 1051.2 828 66.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.1e-305 1051.2 818 65.2
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 5.4e-305 1050.8 827 66.9
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 7.0e-305 1050.4 814 66.5
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 7.0e-305 1050.4 818 65.0
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 5.9e-304 1047.3 820 64.3
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 7.8e-304 1047.0 827 64.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 7.8e-304 1047.0 774 68.6
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 1.1e-302 1043.1 774 68.5
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.6e-301 1039.3 813 66.5
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 4.7e-301 1037.7 818 64.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 4.7e-301 1037.7 810 66.9
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 2.0e-299 1032.3 805 64.6
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 8.3e-298 1026.9 781 65.7
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 1.9e-297 1025.8 785 65.7
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 1.6e-296 1022.7 799 64.6
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.6e-296 1022.7 816 64.1
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 1.6e-296 1022.7 809 65.0
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 2.0e-296 1022.3 818 64.9
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 3.5e-296 1021.5 845 62.7
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 6.0e-296 1020.8 720 73.2
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-295 1018.8 677 75.2
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 6.6e-295 1017.3 785 65.5
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 8.6e-295 1016.9 748 66.6
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 1.9e-294 1015.8 748 66.3
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 2.5e-294 1015.4 819 64.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 5.6e-294 1014.2 809 65.9
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 1.2e-293 1013.1 785 65.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.2e-293 1013.1 785 65.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.2e-293 1013.1 785 65.0
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 2.0e-291 1005.7 818 64.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 7.5e-291 1003.8 768 64.7
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 3.7e-290 1001.5 785 64.2
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.1e-289 1000.0 785 64.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 1.1e-284 983.4 820 62.6
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.5e-283 979.5 786 66.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 8.4e-282 973.8 792 63.8
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.4e-281 973.0 784 61.9
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 4.3e-278 961.4 838 61.7
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 4.7e-277 958.0 843 59.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 3.4e-275 951.8 816 63.4
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 2.7e-272 942.2 819 60.2
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 7.8e-272 940.6 748 62.2
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 9.0e-268 927.2 775 60.6
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 9.0e-268 927.2 803 58.5
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.4e-257 892.5 779 59.3
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.2e-257 892.1 741 62.5
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 3.9e-255 885.2 780 59.6
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.2e-242 842.8 833 53.9
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.6e-232 810.1 754 56.9
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 9.7e-230 800.8 579 72.0
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 3.7e-229 798.9 809 52.4
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.0e-220 768.1 546 71.6
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.0e-220 768.1 546 71.6
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.0e-218 764.2 780 50.8
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.0e-215 752.7 751 51.3
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 6.8e-207 724.9 810 51.0
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 3.8e-194 682.6 769 47.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 3.8e-165 586.3 776 42.9
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.5e-147 526.6 402 68.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 2.0e-134 484.2 366 67.5
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.6e-102 377.5 285 67.4
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.2e-81 308.9 342 51.8
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.3e-64 252.3 202 63.9
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 2.4e-63 248.1 601 29.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 7.1e-55 219.9 166 67.5
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 8.6e-53 213.0 143 71.3
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 1.7e-48 198.7 170 61.8
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.2e-39 167.5 173 54.9
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.0e-37 162.9 721 23.6
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 6.6e-37 160.2 188 49.5
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 3.3e-36 157.9 656 24.5
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.2e-30 139.4 151 49.7
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-26 126.3 121 55.4
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.6e-14 85.9 244 27.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-13 82.4 106 40.6
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 6.7e-13 80.5 73 63.0
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.9e-12 79.0 272 28.7
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 4.1e-10 71.2 68 55.9
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 3.8e-08 64.7 38 73.7
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 8.5e-08 63.5 123 36.6
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 5.5e-07 60.8 98 43.9


User provided reference genes

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