Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003330 Simmondsia chinensis HOM05D007164 ORTHO05D008802 2.1e-244 848.6 424 100.0
Actinidia24839 Actinidia chinensis HOM05D007164 ORTHO05D008802 4.2e-51 206.5 489 35.2
AUR62033184 Chenopodium quinoa HOM05D007164 ORTHO05D008802 7.9e-50 202.2 490 34.3
Ah.15g093880 Amaranthus hybridus HOM05D007164 ORTHO05D008802 1.5e-48 198.0 450 35.1
AUR62008594 Chenopodium quinoa HOM05D007164 ORTHO05D008802 6.2e-47 192.6 500 34.0
Potri.002G208058 Populus trichocarpa HOM05D007164 ORTHO05D008802 2.1e-42 177.6 489 32.7
QL12p030187 Quercus lobata HOM05D007164 ORTHO05D008802 2.3e-41 174.1 487 32.9
Dinv33025 Davidia involucrata HOM05D007164 ORTHO05D008802 1.5e-40 171.4 438 34.5
TWI23G0507 Tripterygium wilfordii HOM05D007164 ORTHO05D008802 1.9e-40 171.0 496 31.7
Rhsim01G0283000 Rhododendron simsii HOM05D007164 ORTHO05D008802 1.6e-39 167.9 475 32.8
Manes.01G216000 Manihot esculenta HOM05D007164 ORTHO05D008802 1.1e-38 165.2 508 30.5
Sabra02G0151300 Salix brachista HOM05D007164 ORTHO05D008802 4.0e-38 163.3 538 30.9
Thecc.01G295000 Theobroma cacao HOM05D007164 ORTHO05D008802 2.0e-37 161.0 470 32.3
HanXRQChr10g0283971 Helianthus annuus HOM05D007164 ORTHO05D008802 4.9e-36 156.4 473 31.3
Duzib138G1086 Durio zibethinus HOM05D007164 ORTHO05D008802 7.9e-34 149.1 486 30.7
Sabra02G0151900 Salix brachista HOM05D007164 ORTHO05D008802 1.9e-32 144.4 553 29.1
MD03G1283300 Malus domestica HOM05D007164 ORTHO05D008802 4.3e-32 143.3 440 30.7
Lj2A1189G41 Lonicera japonica HOM05D007164 ORTHO05D008802 9.7e-32 142.1 262 37.0
CANSAT25G0358 Cannabis sativa HOM05D007164 ORTHO05D008802 1.3e-31 141.7 492 30.1
Gorai.004G088600 Gossypium raimondii HOM05D007164 ORTHO05D008802 4.8e-31 139.8 495 29.5
Atru.chr5.1222 Acer truncatum HOM05D007164 ORTHO05D008802 1.8e-30 137.9 308 36.0
FAN20G2954 Fragaria x ananassa HOM05D007164 ORTHO05D008802 3.4e-29 133.7 488 29.9
Gohir.D08G084100 Gossypium hirsutum HOM05D007164 ORTHO05D008802 3.4e-29 133.7 488 29.5
RcHm_v2.0_Chr6g0293271 Rosa chinensis HOM05D007164 ORTHO05D008802 3.4e-29 133.7 472 30.5
Cpa.g.sc9.198 Carica papaya HOM05D007164 ORTHO05D008802 2.2e-28 131.0 458 29.5
Hund18121 Selenicereus undatus HOM05D007164 ORTHO05D008802 6.5e-28 129.4 502 26.7
GSVIVG01010946001 Vitis vinifera HOM05D007164 ORTHO05D008802 6.5e-28 129.4 237 35.4
CsaV3_3G018070 Cucumis sativus L. HOM05D007164 ORTHO05D008802 8.5e-28 129.0 300 35.0
ECA247G0548 Erigeron canadensis HOM05D002562 ORTHO05D002808 8.5e-28 129.0 471 29.1
CiPaw.07G104500 Carya illinoinensis HOM05D007164 ORTHO05D008802 1.4e-27 128.3 217 40.6
vmacro14990 Vaccinium macrocarpon HOM05D007164 ORTHO05D008802 1.9e-27 127.9 461 29.9
FAN24G2541 Fragaria x ananassa HOM05D007164 ORTHO05D008802 2.1e-26 124.4 489 29.2
FAN27G1449 Fragaria x ananassa HOM05D007164 ORTHO05D008802 2.1e-26 124.4 443 28.2
TAR636G2054 Trochodendron aralioides HOM05D007164 ORTHO05D008802 6.1e-26 122.9 505 27.7
Prupe.8G256400 Prunus persica HOM05D007164 ORTHO05D008802 3.0e-25 120.6 356 31.2
THA.LOC104825977 Tarenaya hassleriana HOM05D007164 ORTHO05D008802 3.0e-25 120.6 468 26.7
Migut.D00187 Erythranthe guttata HOM05D007164 ORTHO05D008802 5.1e-25 119.8 234 37.6
Oeu047459.1 Olea europaea HOM05D007164 ORTHO05D008802 5.1e-25 119.8 429 29.1
Haze_04871 Corylus avellana HOM05D007164 ORTHO05D008802 6.7e-25 119.4 254 35.8
ClCG05G010410 Citrullus lanatus HOM05D007164 ORTHO05D008802 1.1e-24 118.6 304 32.2
Eucgr.K03454 Eucalyptus grandis HOM05D007164 ORTHO05D008802 1.1e-24 118.6 486 26.1
MSTRG.21615 Avicennia marina HOM05D007164 ORTHO05D008802 1.5e-24 118.2 223 36.8
Lj6g0003922 Lotus japonicus HOM05D007164 ORTHO05D008802 2.0e-24 117.9 448 29.5
Sed0021441 Sechium edule HOM05D007164 ORTHO05D008802 3.3e-24 117.1 215 38.1
Gohir.A08G075000 Gossypium hirsutum HOM05D007164 ORTHO05D008802 5.7e-24 116.3 210 38.1
arahy.Tifrunner.gnm1.ann1.JK4YNR Arachis hypogaea HOM05D007164 ORTHO05D008802 1.3e-23 115.2 211 37.4
Lalb_Chr18g0047211 Lupinus albus HOM05D007164 ORTHO05D008802 2.2e-23 114.4 450 28.7
COL.COLO4_23399 Corchorus olitorius HOM05D007164 ORTHO05D008802 4.8e-23 113.2 473 28.1
Aqoxy2G03039 Aquilegia oxysepala HOM05D007164 ORTHO05D008802 6.3e-23 112.8 317 30.6
Sopen09g029680 Solanum pennellii HOM05D007164 ORTHO05D008802 8.2e-23 112.5 222 39.2
PGSC0003DMG401011367 Solanum tuberosum HOM05D007164 ORTHO05D008802 1.4e-22 111.7 435 29.4
SalBow3G2762 Salvia bowleyana HOM05D007164 ORTHO05D008802 1.8e-22 111.3 469 26.7
TPR.G27420 Trifolium pratense HOM05D007164 ORTHO05D008802 5.3e-22 109.8 213 36.6
Cc11_g02370 Coffea canephora HOM05D007164 ORTHO05D008802 6.9e-22 109.4 236 33.5
arahy.Tifrunner.gnm1.ann1.94G738 Arachis hypogaea HOM05D007164 ORTHO05D008802 9.1e-22 109.0 210 36.2
arahy.Tifrunner.gnm1.ann1.PB1NMW Arachis hypogaea HOM05D007164 ORTHO05D008802 5.9e-21 106.3 210 36.2
Glyma.13G007800 Glycine max HOM05D007164 ORTHO05D008802 1.0e-20 105.5 208 34.6
Lsat_1_v5_gn_9_3101 Lactuca sativa HOM05D007164 ORTHO05D008802 2.2e-20 104.4 169 39.6
ATR0053G018 Amborella trichopoda HOM05D007164 ORTHO05D008802 2.9e-20 104.0 227 33.0
SGA_v2.0_scaffold2G01414 Striga asiatica HOM05D007164 ORTHO05D008802 3.8e-20 103.6 210 36.7
AL1G12400 Arabidopsis lyrata HOM05D007164 ORTHO05D008802 6.5e-20 102.8 466 27.0
Medtr3g082270 Medicago truncatula HOM05D007164 ORTHO05D008802 1.9e-19 101.3 213 33.8
Psat5g105520 Pisum sativum HOM05D007164 ORTHO05D008802 4.2e-19 100.1 220 35.5
Phvul.007G122524 Phaseolus vulgaris HOM05D007164 ORTHO05D008802 2.1e-18 97.8 457 26.0
HPP92_027362 Vanilla planifolia HOM05D007164 ORTHO05D008802 2.7e-18 97.4 147 38.1
unitig_0.g652 Utricularia gibba HOM05D007164 ORTHO05D008802 4.7e-18 96.7 210 34.8
Carub.0001s0209 Capsella rubella HOM05D007164 ORTHO05D008802 1.0e-17 95.5 471 25.7
EL10Ac7g17490 Beta vulgaris HOM05D007164 ORTHO05D008802 3.0e-17 94.0 333 30.6
FvH4_2g25160 Fragaria vesca HOM05D007164 ORTHO05D008802 3.0e-17 94.0 431 28.8
Thhalv10007546m.g Eutrema salsugineum HOM05D007164 ORTHO05D008802 6.7e-17 92.8 464 25.4
Sp1g01950 Schrenkiella parvula HOM05D007164 ORTHO05D008802 2.0e-16 91.3 461 24.3
A08p37510 Brassica napus HOM05D007164 ORTHO05D008802 3.3e-16 90.5 459 25.7
MELO3C019559.2 Cucumis melo HOM05D007164 ORTHO05D008802 5.7e-16 89.7 258 35.7
BcaB03g13496 Brassica carinata HOM05D007164 ORTHO05D008802 7.4e-16 89.4 451 25.5
Oeu047456.1 Olea europaea HOM05D007164 ORTHO05D008802 1.7e-15 88.2 274 29.9
PGR044G2041 Punica granatum HOM05D007164 ORTHO05D008802 2.8e-15 87.4 182 36.8
CSS0046769 Camellia sinensis var. sinensis HOM05D007164 ORTHO05D008802 8.2e-15 85.9 338 29.9
C08p00350 Brassica napus HOM05D007164 ORTHO05D008802 1.4e-14 85.1 221 28.1
MBI16_g23765_MAGBIO Magnolia biondii HOM05D007164 ORTHO05D008802 1.4e-14 85.1 133 37.6
Aa31LG1G9610 Aethionema arabicum HOM05D007164 ORTHO05D008802 1.8e-14 84.7 171 32.2
HanXRQChr10g0283981 Helianthus annuus HOM05D007164 ORTHO05D008802 2.4e-14 84.3 73 58.9
Nitab4.5_0005474g0060 Nicotiana tabacum HOM05D000498 ORTHO05D000354 3.1e-14 84.0 463 26.3
Nitab4.5_0009457g0020 Nicotiana tabacum HOM05D007164 ORTHO05D008802 4.1e-14 83.6 456 26.5
BcaC07g36981 Brassica carinata HOM05D007164 ORTHO05D008802 9.1e-14 82.4 209 27.8
BolC8t46836H Brassica oleracea HOM05D007164 ORTHO05D008802 1.5e-13 81.6 222 27.5
Zm00001eb252420 Zea mays HOM05D007164 ORTHO05D008802 1.5e-13 81.6 225 29.3
BraA08t35648Z Brassica rapa HOM05D007164 ORTHO05D008802 2.6e-13 80.9 453 25.2
CARHR002290 Cardamine hirsuta HOM05D007164 ORTHO05D008802 2.6e-13 80.9 175 29.7
PGR044G2559 Punica granatum HOM05D007164 ORTHO05D008802 3.5e-13 80.5 202 35.1
Ciclev10017702m.g Citrus clementina HOM05D007164 ORTHO05D008802 1.3e-12 78.6 301 30.2
Peaxi162Scf00067g02422 Petunia axillaris HOM05D007164 ORTHO05D008802 2.7e-10 70.9 166 34.3
SEGI_29739 Sequoiadendron giganteum HOM05D007164 ORTHO05D008802 6.7e-09 66.2 73 39.7
Solyc09g074840.4 Solanum lycopersicum HOM05D007164 ORTHO05D008802 3.3e-08 63.9 449 24.9
ATR0691G271 Amborella trichopoda HOM05D007164 ORTHO05D008802 2.2e-07 61.2 161 29.2
Ca_07266_v3 Cicer arietinum L. HOM05D007164 ORTHO05D008802 2.2e-07 61.2 164 29.3
Mapoly0046s0035 Marchantia polymorpha HOM05D007164 ORTHO05D008802 1.1e-06 58.9 109 35.8
AagrBONN_evm.TU.Sc2ySwM_117.3923 Anthoceros agrestis HOM05D007164 ORTHO05D008802 5.3e-06 56.6 194 26.3
Pp3c3_15490 Physcomitrium patens HOM05D007164 ORTHO05D008802 5.3e-06 56.6 204 25.5
VMungo0540G1256 Vigna mungo HOM05D007164 ORTHO05D008802 7.0e-06 56.2 88 37.5


User provided reference genes

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