Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.7e-297 1024.6 537 100.0
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.4e-240 836.3 542 82.3
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.8e-238 828.6 490 88.2
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.7e-235 819.3 544 80.5
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 6.5e-235 817.4 565 79.1
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.1e-234 816.6 543 80.5
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 9.4e-234 813.5 535 80.9
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.4e-234 813.5 484 87.8
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 4.7e-233 811.2 540 81.1
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 6.1e-233 810.8 543 80.5
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.0e-232 810.1 535 80.7
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.0e-232 810.1 482 87.3
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.4e-232 809.7 536 81.5
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.4e-232 809.7 543 81.0
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.4e-232 809.7 550 80.4
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.4e-232 809.7 553 79.7
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.8e-232 809.3 497 86.3
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.3e-232 808.9 531 81.2
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 4.0e-232 808.1 546 80.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 8.8e-232 807.0 558 79.4
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.5e-231 806.2 544 79.6
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 3.4e-231 805.1 493 85.0
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.4e-231 804.7 483 86.7
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 7.5e-231 803.9 504 84.1
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.3e-230 803.1 483 86.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.7e-230 802.7 483 86.7
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 6.3e-230 800.8 538 80.7
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 6.3e-230 800.8 536 81.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 8.3e-230 800.4 543 79.9
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 8.3e-230 800.4 496 84.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 8.3e-230 800.4 545 78.5
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.8e-229 799.3 542 79.3
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 5.4e-229 797.7 536 79.1
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 5.4e-229 797.7 536 79.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 5.4e-229 797.7 536 79.3
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.2e-228 796.6 539 78.1
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.5e-228 794.7 497 84.5
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 4.5e-228 794.7 509 82.7
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.9e-228 794.3 491 83.5
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.9e-228 794.3 511 82.6
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 5.9e-228 794.3 538 79.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 7.7e-228 793.9 487 84.8
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.0e-227 793.5 487 84.8
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.7e-227 792.7 493 84.0
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-227 792.7 543 77.9
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 2.3e-227 792.3 524 79.8
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 2.3e-227 792.3 487 84.6
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.3e-227 792.3 491 84.3
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.3e-227 792.3 498 83.3
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.9e-227 792.0 524 79.8
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.9e-227 792.0 511 82.6
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.8e-227 791.6 496 84.5
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 8.6e-227 790.4 483 85.5
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 8.6e-227 790.4 543 79.0
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 1.1e-226 790.0 518 81.1
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.1e-226 790.0 540 78.9
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.9e-226 789.3 516 80.8
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.9e-226 789.3 516 80.8
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.9e-226 789.3 531 80.8
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.2e-226 788.1 543 78.1
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 5.5e-226 787.7 489 85.9
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 7.2e-226 787.3 528 79.2
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 7.2e-226 787.3 528 79.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 9.5e-226 786.9 531 78.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.2e-225 786.6 493 82.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.6e-225 786.2 456 88.4
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 1.6e-225 786.2 544 76.8
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.1e-225 785.8 542 77.9
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 8.0e-225 783.9 545 78.2
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.0e-224 783.5 533 78.2
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.8e-224 782.7 544 78.3
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.3e-224 782.3 543 77.3
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 3.0e-224 781.9 496 83.1
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 8.9e-224 780.4 499 82.0
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.4e-223 778.5 556 75.4
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.4e-223 778.1 534 77.5
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 5.7e-223 777.7 493 81.1
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 7.5e-223 777.3 476 85.7
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 9.8e-223 776.9 490 82.2
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 9.8e-223 776.9 524 78.2
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.3e-222 776.5 493 82.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.7e-222 776.2 547 76.4
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 8.3e-222 773.9 490 82.0
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.1e-221 773.5 491 81.7
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.8e-221 772.7 455 87.3
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 2.4e-221 772.3 486 83.1
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 3.2e-221 771.9 506 79.8
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 4.1e-221 771.5 499 82.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 5.4e-221 771.2 539 76.6
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.6e-220 769.6 497 83.3
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 3.5e-220 768.5 486 82.1
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.7e-219 766.1 557 75.6
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 5.0e-219 764.6 493 81.3
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-218 763.5 491 81.3
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 7.5e-215 750.7 509 77.6
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.2e-213 745.3 491 81.3
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.3e-211 740.0 456 84.9
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 4.3e-210 734.9 457 84.9
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 4.3e-210 734.9 456 82.5
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.8e-208 729.6 465 82.2
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.1e-208 728.8 442 85.1
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.6e-204 714.9 511 74.4
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-202 710.3 455 81.3
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 3.6e-201 705.3 396 93.2
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.7e-196 689.1 534 71.0
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 3.5e-196 688.7 479 74.3
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.6e-196 688.3 399 88.7
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.7e-195 686.4 480 74.8
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.9e-194 682.9 410 87.8
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 6.2e-193 677.9 542 69.9
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.5e-191 673.3 399 86.7
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 4.2e-189 665.2 698 58.2
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.0e-188 661.4 477 71.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.0e-188 661.4 510 68.8
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 3.4e-183 645.6 471 74.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 8.1e-177 624.4 407 82.1
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 9.0e-176 620.9 361 89.8
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.2e-175 620.5 400 80.0
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 4.6e-172 608.6 420 76.2
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.8e-171 606.7 398 78.9
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.5e-170 603.6 404 76.0
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 7.4e-170 601.3 358 85.8
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 9.6e-170 600.9 398 77.9
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.1e-168 595.9 356 86.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.3e-168 595.1 402 75.9
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 4.8e-161 572.0 463 68.7
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.6e-151 539.7 528 59.7
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.6e-143 513.1 384 74.2
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 9.7e-138 494.6 418 67.7
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.4e-136 490.7 494 58.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.1e-136 489.6 299 85.3
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 4.2e-133 479.2 446 63.9
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-132 477.6 277 87.7
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 3.7e-129 466.1 331 72.5
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.7e-126 457.2 295 82.7
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.7e-118 430.6 532 47.4
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 4.1e-112 409.5 236 87.7
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 7.7e-111 405.2 261 81.2
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 4.9e-105 386.0 220 89.5
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.5e-77 293.9 213 70.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.2e-74 285.0 450 44.0
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 7.3e-69 265.8 296 54.7
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 4.0e-67 260.0 194 74.7
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.3e-65 255.0 495 39.6
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.9e-65 253.1 150 82.0
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 1.1e-56 225.3 142 83.1
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 6.7e-54 216.1 193 60.1
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.3e-52 211.8 174 64.9
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.6e-47 194.9 118 83.9
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 9.7e-37 159.1 93 80.6
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.6e-36 158.3 144 61.8
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.3e-36 156.4 100 78.0
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.5e-32 144.4 109 76.1
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.0e-30 139.0 101 76.2
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 4.5e-26 123.6 78 84.6
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 8.5e-25 119.4 79 78.5
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.1e-24 119.0 69 87.0
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-23 115.2 100 65.0
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 6.3e-20 103.2 61 85.2
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-19 102.4 55 80.0
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 9.1e-19 99.4 55 80.0
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 6.1e-15 86.7 53 84.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.7e-12 78.6 58 70.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.1e-11 75.9 141 35.5
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 8.5e-09 66.2 47 70.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 8.5e-09 66.2 93 48.4
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 5.5e-08 63.5 39 84.6
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 1.6e-07 62.0 57 56.1
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 2.3e-06 58.2 49 65.3
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.0e-06 57.4 27 96.3


User provided reference genes

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