Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.4e-108 395.6 206 100.0
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 9.3e-73 277.3 200 72.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.9e-71 271.9 200 69.0
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 8.7e-71 270.8 200 70.5
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-70 270.4 200 71.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.5e-70 269.2 200 70.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.3e-70 268.9 200 67.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.3e-70 268.5 201 70.1
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 4.3e-70 268.5 200 69.0
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 5.7e-70 268.1 200 66.5
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.7e-70 268.1 200 69.5
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 9.7e-70 267.3 200 69.0
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 9.7e-70 267.3 200 69.0
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.3e-69 266.9 198 67.7
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.3e-69 266.9 201 65.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.6e-69 266.5 200 69.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.6e-69 266.5 200 67.5
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.6e-69 266.5 200 70.5
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.6e-69 266.5 200 71.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 3.7e-69 265.4 200 66.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.7e-69 265.4 202 68.3
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.7e-69 265.4 203 69.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.1e-68 263.8 201 66.7
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.4e-68 263.5 200 65.5
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.4e-68 263.5 200 67.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.4e-68 263.5 201 67.2
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.8e-68 263.1 201 66.2
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.4e-68 262.7 200 68.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.1e-68 262.3 200 68.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 3.1e-68 262.3 198 66.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 4.1e-68 261.9 201 66.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.2e-67 260.4 198 68.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.2e-67 260.4 203 68.5
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.0e-67 259.6 204 67.6
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.4e-67 258.8 202 65.3
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.9e-67 258.1 201 65.2
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 5.9e-67 258.1 200 65.5
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 5.9e-67 258.1 201 64.2
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.3e-66 256.9 201 64.7
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.3e-66 256.9 210 63.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.9e-66 255.8 194 69.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.9e-66 255.8 200 65.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-66 255.8 200 64.0
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 2.9e-66 255.8 200 67.5
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.0e-66 255.0 200 67.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.9e-65 253.1 194 66.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.2e-65 252.3 212 64.2
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.5e-65 251.5 200 67.0
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.6e-64 250.0 191 67.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.1e-64 249.6 211 63.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.6e-64 248.8 200 63.5
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 3.6e-64 248.8 200 63.0
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.0e-63 245.7 201 63.7
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 6.7e-63 244.6 212 62.3
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 6.7e-63 244.6 212 62.7
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 6.7e-63 244.6 200 62.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.0e-62 243.0 188 65.4
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.6e-62 242.7 192 65.1
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 2.6e-62 242.7 200 63.5
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.6e-62 242.7 200 62.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.3e-62 242.3 194 63.9
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 4.4e-62 241.9 194 64.4
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 7.4e-62 241.1 200 62.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 9.7e-62 240.7 194 63.4
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 9.7e-62 240.7 202 62.4
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-61 239.6 200 63.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.2e-61 239.6 200 62.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.2e-61 239.6 200 61.5
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 6.3e-61 238.0 200 62.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-60 237.3 200 62.0
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.8e-60 236.5 200 62.5
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.8e-60 236.5 200 63.0
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 4.1e-60 235.3 196 63.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.0e-59 233.0 206 59.7
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.6e-59 232.6 209 60.3
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 7.7e-59 231.1 209 59.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 7.7e-59 231.1 188 63.3
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.0e-58 230.7 214 57.9
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.0e-58 230.7 200 59.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.2e-58 229.6 200 60.5
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 2.2e-58 229.6 201 58.2
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 2.9e-58 229.2 183 63.4
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 5.0e-58 228.4 175 67.4
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 8.5e-58 227.6 214 58.4
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 9.4e-57 224.2 157 71.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 7.9e-56 221.1 302 46.4
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.0e-55 220.7 201 60.7
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.4e-55 220.3 196 59.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.9e-55 218.8 200 59.0
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.2e-55 218.4 200 60.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 6.7e-55 218.0 200 59.0
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 8.8e-55 217.6 196 59.2
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.1e-54 217.2 195 59.5
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.5e-54 216.9 200 58.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.0e-54 216.5 200 58.0
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.6e-54 216.1 203 60.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 2.8e-53 212.6 200 59.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.7e-53 212.2 160 66.9
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 3.7e-53 212.2 256 50.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 6.3e-53 211.5 197 55.8
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 8.2e-53 211.1 200 57.0
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.1e-52 210.7 201 56.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.0e-50 204.1 200 54.5
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.2e-50 203.0 202 56.9
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 3.8e-50 202.2 200 54.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.8e-50 202.2 200 55.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.5e-49 199.5 199 53.8
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 3.2e-49 199.1 205 56.1
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 7.2e-49 198.0 203 55.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.7e-48 196.1 200 57.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 8.0e-48 194.5 200 53.0
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 8.0e-48 194.5 200 53.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.3e-47 193.0 200 52.5
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 6.7e-47 191.4 200 52.0
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 9.7e-46 187.6 203 52.2
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.8e-45 185.3 190 52.6
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.4e-44 183.0 165 57.6
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.1e-44 182.2 200 53.5
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 7.0e-44 181.4 202 51.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.2e-42 176.4 202 48.5
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.9e-42 176.0 198 52.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 8.5e-42 174.5 177 53.1
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 8.5e-42 174.5 131 64.1
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.1e-41 174.1 151 59.6
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.5e-41 171.8 198 52.5
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.2e-40 170.6 166 54.2
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.2e-40 170.6 190 52.1
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 9.8e-38 161.0 170 50.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.5e-35 152.1 194 50.0
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 8.0e-32 141.4 99 70.7
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 6.8e-31 138.3 97 70.1
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 7.5e-30 134.8 132 46.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.7e-29 133.7 136 52.2
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.3e-26 124.0 127 51.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.5e-25 119.8 99 66.7
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.3e-25 119.4 101 56.4
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.1e-24 116.7 100 56.0
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 2.1e-24 116.7 106 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 4.7e-24 115.5 133 46.6
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.0e-23 114.4 154 43.5
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.4e-23 114.0 129 52.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 6.4e-21 105.1 117 53.0
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.4e-20 104.0 121 49.6
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.8e-20 103.6 121 48.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-20 102.4 101 56.4
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.0e-19 100.1 136 41.9
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.0e-18 97.8 102 56.9
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.3e-18 97.4 101 50.5
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.4e-15 87.4 146 36.3
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 2.3e-15 86.7 65 67.7
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.9e-13 79.7 65 64.6
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.4e-12 77.4 55 69.1
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.2e-11 74.3 124 37.9
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 6.0e-11 72.0 57 66.7
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 2.3e-10 70.1 45 68.9
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 2.5e-09 66.6 66 57.6
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-08 64.3 101 37.6
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 3.4e-06 56.2 61 50.8


User provided reference genes

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