Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.5e-107 392.1 195 100.0
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 5.6e-59 231.5 163 68.7
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 2.8e-58 229.2 172 65.1
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 6.2e-58 228.0 165 65.5
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 1.4e-57 226.9 174 63.8
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.8e-57 226.5 174 63.2
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 5.2e-57 224.9 172 64.5
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 5.2e-57 224.9 172 64.5
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.5e-56 223.4 170 62.9
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 2.0e-56 223.0 171 62.6
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 3.4e-56 222.2 171 61.4
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 9.8e-56 220.7 174 62.1
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 2.2e-55 219.5 173 62.4
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 4.9e-55 218.4 170 62.4
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 8.3e-55 217.6 174 61.5
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 1.4e-54 216.9 170 60.0
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 2.4e-54 216.1 172 62.8
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 2.4e-54 216.1 172 62.2
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 5.4e-54 214.9 166 64.5
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 9.2e-54 214.2 175 60.6
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.2e-53 213.8 149 68.5
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.2e-53 213.8 174 60.9
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 2.7e-53 212.6 173 60.7
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 3.5e-53 212.2 167 62.9
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 3.5e-53 212.2 175 59.4
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 4.6e-53 211.8 167 59.9
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 4.6e-53 211.8 168 61.9
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 4.6e-53 211.8 173 60.1
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 6.0e-53 211.5 179 58.1
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 7.8e-53 211.1 165 61.8
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.3e-52 210.3 174 59.2
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.7e-52 209.9 156 64.1
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 2.3e-52 209.5 164 60.4
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 2.3e-52 209.5 169 59.8
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 3.0e-52 209.1 172 59.3
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 3.9e-52 208.8 172 59.3
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 6.6e-52 208.0 164 62.2
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 1.1e-51 207.2 162 63.6
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 1.5e-51 206.8 151 65.6
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 1.9e-51 206.5 159 61.0
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 1.9e-51 206.5 171 57.9
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 3.3e-51 205.7 172 62.2
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 4.3e-51 205.3 175 56.6
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 5.6e-51 204.9 164 59.8
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 7.3e-51 204.5 165 61.8
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.2e-50 203.8 153 62.7
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 1.6e-50 203.4 175 58.9
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 2.1e-50 203.0 173 57.2
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 2.1e-50 203.0 165 60.6
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 3.6e-50 202.2 169 58.6
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 3.6e-50 202.2 171 57.3
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 3.6e-50 202.2 153 62.1
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 8.1e-50 201.1 169 58.6
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.1e-49 200.7 173 56.6
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.1e-49 200.7 175 58.3
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.1e-49 200.7 161 62.1
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.4e-49 200.3 157 57.3
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.4e-49 200.3 157 57.3
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 1.8e-49 199.9 155 58.1
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.8e-49 199.9 172 57.0
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 1.8e-49 199.9 164 58.5
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 2.3e-49 199.5 172 57.0
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 4.0e-49 198.7 169 56.2
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 5.2e-49 198.4 152 61.2
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 8.9e-49 197.6 177 57.6
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 1.2e-48 197.2 165 58.2
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.2e-48 197.2 172 56.4
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.5e-48 196.8 150 62.0
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 2.0e-48 196.4 172 56.4
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.0e-48 196.4 144 62.5
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 5.8e-48 194.9 162 54.9
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 3.7e-47 192.2 155 60.6
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 6.4e-47 191.4 160 56.2
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.9e-46 189.9 151 60.9
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 3.2e-46 189.1 163 56.4
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 3.2e-46 189.1 149 60.4
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 3.2e-46 189.1 148 59.5
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 4.1e-46 188.7 178 54.5
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 4.1e-46 188.7 137 62.0
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 5.4e-46 188.3 164 54.9
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 1.6e-45 186.8 144 60.4
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.1e-45 186.4 180 53.3
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 2.1e-45 186.4 163 56.4
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 7.8e-45 184.5 165 55.2
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 7.8e-45 184.5 165 55.2
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 7.8e-45 184.5 165 55.2
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 7.8e-45 184.5 158 56.3
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 1.3e-44 183.7 149 57.7
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.7e-44 183.3 156 57.1
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 1.1e-43 180.6 275 40.0
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 3.6e-42 175.6 181 49.2
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 3.6e-42 175.6 173 49.7
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 8.9e-41 171.0 120 66.7
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 3.4e-40 169.1 108 74.1
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 5.8e-40 168.3 158 50.0
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 1.9e-38 163.3 108 68.5
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.0e-36 157.5 107 70.1
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 1.3e-36 157.1 167 47.9
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 5.6e-35 151.8 171 48.0
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 4.7e-34 148.7 173 44.5
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.0e-32 143.3 113 58.4
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 1.3e-31 140.6 135 48.1
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 4.6e-29 132.1 89 66.3
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 7.8e-29 131.3 109 54.1
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.0e-28 131.0 112 56.2
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 5.6e-27 125.2 124 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 2.4e-22 109.8 131 42.7
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 5.1e-20 102.1 97 46.4
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 7.6e-16 88.2 137 40.9
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 2.2e-15 86.7 128 39.1
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 3.8e-15 85.9 80 52.5
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 9.3e-14 81.3 128 37.5
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 4.8e-10 68.9 60 55.0
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 3.1e-09 66.2 45 64.4
Ah.02g120930 Amaranthus hybridus HOM05D055707 ORTHO05D008441 1.7e-07 60.5 44 59.1


User provided reference genes

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