Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 7.3e-175 617.1 302 100.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.9e-130 469.5 317 74.1
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.6e-129 466.5 311 73.6
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 4.6e-129 464.9 320 72.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.8e-128 463.0 323 70.6
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.3e-128 462.6 305 75.7
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 2.2e-126 456.1 309 73.8
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.2e-126 456.1 317 71.6
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.7e-126 455.3 324 71.3
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 4.8e-126 454.9 311 72.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 4.8e-126 454.9 301 74.8
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 6.3e-126 454.5 311 72.0
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 8.2e-126 454.1 310 72.6
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.4e-125 453.4 319 72.1
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 2.4e-125 452.6 314 71.3
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 2.4e-125 452.6 302 73.8
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 4.1e-125 451.8 307 73.0
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 2.0e-124 449.5 293 75.4
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 2.6e-124 449.1 314 72.9
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.6e-124 449.1 308 72.7
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.3e-123 446.8 310 73.2
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.9e-123 445.7 315 70.2
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.1e-122 443.7 318 69.5
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.1e-122 443.7 312 71.5
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-122 443.7 316 70.3
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.4e-122 443.4 307 70.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.9e-122 443.0 322 68.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.9e-122 443.0 322 68.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.9e-122 443.0 304 71.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.9e-122 443.0 301 71.1
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 2.5e-122 442.6 318 68.2
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 4.2e-122 441.8 318 67.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 7.2e-122 441.0 314 69.7
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 9.4e-122 440.7 315 69.5
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 2.1e-121 439.5 319 68.7
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.1e-121 439.5 322 67.7
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.7e-121 439.1 313 70.3
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 7.9e-121 437.6 296 71.3
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.4e-120 436.8 319 68.7
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.4e-120 436.8 312 71.2
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.8e-120 436.4 319 69.0
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 2.3e-120 436.0 318 69.2
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.9e-120 435.3 312 68.6
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 3.9e-120 435.3 309 68.9
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 5.1e-120 434.9 308 69.5
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.8e-120 434.1 340 67.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 8.8e-120 434.1 309 69.9
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.1e-119 433.7 314 68.8
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.5e-119 432.6 309 67.6
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.3e-119 432.2 319 68.3
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 3.3e-119 432.2 315 69.5
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 5.7e-119 431.4 320 66.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-118 430.3 310 68.1
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.3e-118 430.3 314 68.5
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.2e-118 429.5 312 67.9
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 2.2e-118 429.5 305 70.2
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.2e-118 429.5 328 64.6
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 4.8e-118 428.3 312 68.6
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 6.3e-118 427.9 315 69.2
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.1e-117 427.2 319 67.1
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.1e-117 427.2 304 70.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.4e-117 426.8 302 70.5
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 2.4e-117 426.0 306 68.6
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 4.1e-117 425.2 312 69.2
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.5e-116 423.3 308 68.2
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.0e-116 422.9 302 69.2
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 3.4e-116 422.2 311 67.8
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 4.5e-116 421.8 311 67.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 3.8e-115 418.7 311 69.1
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 6.5e-115 417.9 314 67.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.1e-114 417.2 302 67.9
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.1e-113 412.9 319 66.8
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.7e-113 412.5 324 64.8
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.6e-111 406.0 321 63.9
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 3.7e-110 402.1 306 65.4
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 6.3e-110 401.4 282 71.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.4e-109 400.2 306 65.7
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.8e-109 399.8 311 65.0
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 4.1e-109 398.7 306 65.4
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 5.3e-109 398.3 315 63.8
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.5e-108 395.6 315 62.5
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 7.7e-108 394.4 316 62.7
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.0e-107 394.0 315 62.9
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.9e-107 392.5 338 60.7
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 6.5e-107 391.3 313 63.6
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.1e-106 390.6 314 64.3
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.5e-106 390.2 308 62.3
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 9.4e-106 387.5 309 63.8
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.7e-105 386.0 315 62.2
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 2.0e-100 369.8 308 59.7
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 4.5e-100 368.6 326 58.0
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 4.2e-98 362.1 307 60.9
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 8.0e-97 357.8 312 61.2
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 8.8e-96 354.4 303 58.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.4e-95 352.4 377 52.8
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.1e-93 345.9 279 63.1
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 4.1e-93 345.5 292 58.6
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 7.0e-93 344.7 266 66.9
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 4.5e-92 342.0 301 57.8
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.9e-92 341.7 292 58.9
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.2e-91 339.7 273 63.0
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.8e-91 339.0 226 73.9
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 6.5e-91 338.2 293 59.4
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.1e-90 337.4 300 60.0
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.2e-88 328.6 230 70.9
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 2.4e-77 293.1 351 48.1
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 4.3e-74 282.3 230 62.2
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-73 280.4 195 71.8
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.6e-73 279.3 231 62.8
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 8.3e-70 268.1 336 47.3
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.0e-67 259.6 173 72.8
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.6e-66 255.4 197 62.4
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 2.1e-65 253.4 190 66.3
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 9.9e-55 218.0 223 56.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 3.3e-50 203.0 201 53.7
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 4.7e-49 199.1 143 67.1
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.4e-47 193.0 188 58.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.4e-45 186.8 277 42.6
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.6e-43 178.7 161 57.8
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 1.4e-40 171.0 113 69.0
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 8.4e-38 161.8 294 37.8
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 9.3e-37 158.3 300 37.3
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 2.4e-29 133.7 124 57.3
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-26 124.0 121 57.0
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-21 107.5 121 52.9
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 4.6e-20 102.8 164 42.1
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.0e-19 101.7 119 51.3
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 6.7e-19 99.0 83 55.4
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.1e-18 98.2 73 65.8
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 2.5e-18 97.1 113 46.0
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 5.7e-18 95.9 69 62.3
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 5.7e-18 95.9 137 41.6
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 4.8e-17 92.8 70 64.3
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 3.1e-16 90.1 71 67.6
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.5e-15 87.8 88 52.3
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.0e-14 85.1 60 71.7
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 8.4e-14 82.0 58 70.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.5e-13 79.3 83 51.8
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 5.5e-13 79.3 118 42.4
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 4.5e-07 59.7 46 71.7
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 5.0e-06 56.2 56 53.6


User provided reference genes

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