Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 9.5e-138 493.4 235 100.0
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.2e-133 478.4 234 97.0
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.1e-74 283.9 202 65.8
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 7.2e-69 264.6 142 85.9
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 9.3e-69 264.2 187 65.8
Sc15g0000880 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.2e-61 239.2 130 81.5
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-60 237.3 123 88.6
Sc03g0004030 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.1e-51 205.3 118 83.9
Sc03g0004050 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.1e-51 205.3 118 83.9
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.3e-46 190.7 145 58.6
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 6.1e-36 155.2 93 73.1
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.2e-35 152.1 105 65.7
Sc01g0007590 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.7e-33 146.0 91 71.4
Sc11g0007070 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.2e-27 125.6 105 54.3
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.7e-14 84.0 121 36.4
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.3e-14 83.6 121 36.4
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.0e-14 83.2 121 36.4
Sc15g0000710 Simmondsia chinensis HOM05D009209 ORTHO05D011705 5.0e-14 82.4 211 27.0
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 6.6e-14 82.0 194 26.3
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 2.5e-13 80.1 156 28.8
Sc02g0007500 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.5e-13 80.1 104 36.5
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.3e-13 79.7 156 28.8
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 4.3e-13 79.3 130 30.8
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.6e-13 79.0 156 28.8
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 5.6e-13 79.0 204 25.0
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.3e-13 78.6 165 28.5
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.7e-12 75.9 170 24.7
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 1.8e-11 73.9 127 27.6
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 1.8e-11 73.9 52 67.3
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.3e-11 73.6 172 22.7
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 3.1e-11 73.2 169 29.6
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 4.0e-11 72.8 112 32.1
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 6.8e-11 72.0 121 33.1
CSS0028826 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.2e-10 71.2 116 33.6
EL10Ac7g16632 Beta vulgaris HOM05D008976 ORTHO05D011121 1.5e-10 70.9 125 28.0
EL10Ac8g19650 Beta vulgaris HOM05D000992 ORTHO05D006704 1.5e-10 70.9 141 28.4
CSS0042776 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.4e-10 69.7 140 30.0
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.4e-10 69.7 114 31.6
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 5.8e-10 68.9 128 30.5
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 7.5e-10 68.6 111 31.5
CSS0004424 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.3e-09 67.8 71 40.8
EL10Ac5g12917 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-09 67.4 125 28.8
EL10Ac6g13580 Beta vulgaris HOM05D008976 ORTHO05D011121 1.7e-09 67.4 125 28.8
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 3.7e-09 66.2 126 31.7
Actinidia36659 Actinidia chinensis HOM05D012898 ORTHO05D009356 4.9e-09 65.9 114 31.6
Lj6g0012166 Lotus japonicus HOM05D002777 ORTHO05D001516 6.4e-09 65.5 191 22.0
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.3e-09 65.1 121 28.1
EL10Ac1g00211 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-08 64.7 131 32.1
EL10Ac6g15260 Beta vulgaris HOM05D008976 ORTHO05D011121 1.4e-08 64.3 131 32.1
Rhsim10G0135400 Rhododendron simsii HOM05D001175 ORTHO05D003291 1.4e-08 64.3 138 26.1
Sc20g0003570 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.4e-08 64.3 156 23.1
Ah.15g098970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.9e-08 63.9 159 29.6
EL10Ac2g04471 Beta vulgaris HOM05D008976 ORTHO05D011121 1.9e-08 63.9 167 29.3
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 1.9e-08 63.9 81 35.8
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 2.4e-08 63.5 160 27.5
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.4e-08 63.5 156 25.0
EL10Ac3g05379 Beta vulgaris HOM05D008976 ORTHO05D011121 3.2e-08 63.2 169 25.4
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 4.1e-08 62.8 174 25.9
Phvul.010G135050 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 4.1e-08 62.8 171 21.6
Sc21g0005420 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.1e-08 62.8 120 24.2
EL10Ac4g09899 Beta vulgaris HOM05D008976 ORTHO05D011121 5.4e-08 62.4 127 28.3
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 5.4e-08 62.4 111 28.8
Medtr1g033680 Medicago truncatula HOM05D002777 ORTHO05D001516 7.0e-08 62.0 151 23.8
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 9.2e-08 61.6 91 31.9
EL10Ac4g09831 Beta vulgaris HOM05D008976 ORTHO05D011121 9.2e-08 61.6 125 27.2
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 9.2e-08 61.6 143 28.7
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.2e-08 61.6 114 27.2
Thecc.09G068100 Theobroma cacao HOM05D012808 ORTHO05D011121 9.2e-08 61.6 167 25.1
HanXRQChr13g0401811 Helianthus annuus HOM05D000003 ORTHO05D000004 1.2e-07 61.2 236 23.7
Rhsim11G0150800 Rhododendron simsii HOM05D012808 ORTHO05D009356 1.2e-07 61.2 135 25.9
EL10Ac6g14951 Beta vulgaris HOM05D008976 ORTHO05D011121 1.6e-07 60.8 169 25.4
Ah.04g161050 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.0e-07 60.5 159 25.8
Ah.11g041130 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.7e-07 60.1 119 32.8
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.6e-07 59.3 235 21.3
Ah.03g144970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.6e-07 59.3 89 29.2
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 4.6e-07 59.3 188 25.0
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 4.6e-07 59.3 98 29.6
EL10Ac1g00331 Beta vulgaris HOM05D008976 ORTHO05D011121 6.0e-07 58.9 169 26.0
EL10Ac5g11650 Beta vulgaris HOM05D008976 ORTHO05D011121 6.0e-07 58.9 169 23.1
HanXRQChr05g0132981 Helianthus annuus HOM05D003915 ORTHO05D005386 6.0e-07 58.9 190 25.8
EL10Ac5g12223 Beta vulgaris HOM05D008976 ORTHO05D011121 7.8e-07 58.5 162 23.5
EL10Ac7g17245 Beta vulgaris HOM05D008976 ORTHO05D011121 1.0e-06 58.2 169 27.2
Sc02g0007120 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.0e-06 58.2 82 29.3
Sc13g0006150 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.3e-06 57.8 162 23.5
vmacro11925 Vaccinium macrocarpon HOM05D000203 ORTHO05D009356 1.3e-06 57.8 78 32.1
Actinidia11343 Actinidia chinensis HOM05D019814 ORTHO05D009356 1.7e-06 57.4 92 31.5
Ah.05g173080 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-06 57.4 91 27.5
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.3e-06 57.0 78 33.3
EL10Ac1g02070 Beta vulgaris HOM05D008976 ORTHO05D011121 2.3e-06 57.0 169 24.9
CSS0009574 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.3e-06 57.0 104 30.8
Gorai.002G084400 Gossypium raimondii HOM05D000003 ORTHO05D015081 2.3e-06 57.0 80 35.0
Lj2g0009734 Lotus japonicus HOM05D002777 ORTHO05D001516 2.3e-06 57.0 125 24.0
Sc06g0006060 Simmondsia chinensis HOM05D011136 ORTHO05D010856 2.3e-06 57.0 79 30.4
Lsat_1_v5_gn_1_31001 Lactuca sativa HOM05D003915 ORTHO05D005386 3.0e-06 56.6 126 26.2
BcaC08g44583 Brassica carinata HOM05D000496 ORTHO05D019970 5.0e-06 55.8 197 24.9
CSS0042955 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D009356 6.6e-06 55.5 94 33.0
Lj5g0007242 Lotus japonicus HOM05D002777 ORTHO05D001516 6.6e-06 55.5 106 29.2
Phvul.006G023800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.6e-06 55.5 207 21.3
Phvul.L005801 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 6.6e-06 55.5 181 21.0
Thecc.03G045800 Theobroma cacao HOM05D009209 ORTHO05D409013 6.6e-06 55.5 102 28.4
BcaNung03496 Brassica carinata HOM05D000496 ORTHO05D000411 8.6e-06 55.1 162 25.3
Lsat_1_v5_gn_4_104301 Lactuca sativa HOM05D003915 ORTHO05D005386 8.6e-06 55.1 101 28.7
Medtr7g108760 Medicago truncatula HOM05D008558 ORTHO05D000006 8.6e-06 55.1 89 28.1
Medtr8g058470 Medicago truncatula HOM05D008558 ORTHO05D000006 8.6e-06 55.1 89 28.1
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 8.6e-06 55.1 114 22.8


User provided reference genes

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