Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.1e-265 917.9 461 100.0
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.1e-132 477.6 234 97.0
Sc21g0004040 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.4e-124 450.7 280 80.0
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.8e-101 373.2 379 51.7
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.6e-85 320.9 174 86.8
Sc22g0002500 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.0e-79 300.1 231 69.7
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.3e-70 270.0 407 39.1
Sc15g0000880 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.6e-59 234.6 130 80.8
Sc03g0004030 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.5e-49 200.7 118 83.1
Sc03g0004050 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.5e-49 200.7 118 83.1
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 4.4e-46 189.9 145 58.6
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.1e-44 183.7 250 46.4
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 8.6e-42 175.6 141 60.3
Sc01g0007590 Simmondsia chinensis HOM05D009209 ORTHO05D011705 4.7e-32 143.3 91 70.3
Sc11g0007070 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-27 128.6 131 48.9
Sc15g0000710 Simmondsia chinensis HOM05D009209 ORTHO05D011705 9.2e-20 102.4 407 24.6
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.2e-14 85.5 125 35.2
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.5e-14 85.1 125 35.2
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.0e-14 84.7 125 35.2
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.4e-12 78.6 215 24.2
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.4e-12 78.6 248 23.8
Sc02g0007500 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.4e-12 77.8 104 35.6
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 4.1e-12 77.0 196 28.6
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 4.1e-12 77.0 194 24.7
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 9.2e-12 75.9 125 31.2
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.2e-12 75.9 145 30.3
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.2e-11 75.5 198 27.8
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 4.6e-11 73.6 52 67.3
Sc16g0009420 Simmondsia chinensis HOM05D009209 ORTHO05D011705 6.0e-11 73.2 89 58.4
CSS0028826 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 1.0e-10 72.4 116 33.6
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.0e-10 72.4 173 26.6
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 1.3e-10 72.0 142 31.7
EL10Ac7g16632 Beta vulgaris HOM05D008976 ORTHO05D011121 1.3e-10 72.0 125 28.8
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.3e-10 72.0 112 32.1
EL10Ac8g19650 Beta vulgaris HOM05D000992 ORTHO05D006704 1.7e-10 71.6 141 29.1
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 3.0e-10 70.9 127 27.6
CSS0042776 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.0e-10 70.9 140 30.0
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 3.9e-10 70.5 160 27.5
Sc10g0009390 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.1e-10 70.1 172 22.1
CSS0004424 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 8.7e-10 69.3 111 33.3
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.7e-10 69.3 121 29.8
EL10Ac5g12917 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-09 68.9 125 29.6
EL10Ac6g13580 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-09 68.9 125 29.6
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-09 68.9 193 22.8
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 5.6e-09 66.6 101 31.7
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.6e-09 65.9 114 30.7
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 9.6e-09 65.9 152 26.3
Actinidia36659 Actinidia chinensis HOM05D012898 ORTHO05D009356 1.2e-08 65.5 96 32.3
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 1.2e-08 65.5 154 26.6
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 1.6e-08 65.1 126 31.7
Sc20g0003570 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.6e-08 65.1 156 23.1
EL10Ac1g00211 Beta vulgaris HOM05D008976 ORTHO05D011121 2.1e-08 64.7 131 32.1
EL10Ac6g15260 Beta vulgaris HOM05D008976 ORTHO05D011121 4.7e-08 63.5 239 24.3
Medtr1g033680 Medicago truncatula HOM05D002777 ORTHO05D001516 4.7e-08 63.5 226 22.6
Sc13g0006150 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.2e-08 63.2 188 21.8
Sc21g0005420 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.2e-08 63.2 182 22.5
EL10Ac2g04471 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-07 62.4 167 29.3
EL10Ac3g05379 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-07 62.4 126 31.7
Ah.15g098970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.4e-07 62.0 161 26.7
Rhsim10G0135400 Rhododendron simsii HOM05D001175 ORTHO05D003291 1.4e-07 62.0 138 26.1
Phvul.010G135050 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.8e-07 61.6 171 21.6
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.4e-07 61.2 216 23.1
EL10Ac4g09831 Beta vulgaris HOM05D008976 ORTHO05D011121 3.1e-07 60.8 125 27.2
EL10Ac4g09899 Beta vulgaris HOM05D008976 ORTHO05D011121 4.0e-07 60.5 127 28.3
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 4.0e-07 60.5 143 28.7
EL10Ac6g14951 Beta vulgaris HOM05D008976 ORTHO05D011121 5.2e-07 60.1 126 27.8
Ah.04g161050 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.9e-07 59.7 159 25.2
Ah.03g144970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 9.0e-07 59.3 89 29.2
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 9.0e-07 59.3 91 31.9
Lj6g0012166 Lotus japonicus HOM05D002777 ORTHO05D001516 9.0e-07 59.3 191 20.4
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 9.0e-07 59.3 111 27.9
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 1.2e-06 58.9 86 32.6
Rhsim11G0150800 Rhododendron simsii HOM05D012808 ORTHO05D009356 2.0e-06 58.2 102 27.5
CSS0009574 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.6e-06 57.8 104 30.8
Phvul.006G023800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.4e-06 57.4 207 21.7
Phvul.L005801 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.4e-06 57.4 181 21.5
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 3.4e-06 57.4 155 27.1
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 3.4e-06 57.4 98 29.6
Thecc.09G068100 Theobroma cacao HOM05D012808 ORTHO05D011121 3.4e-06 57.4 146 25.3
EL10Ac1g00331 Beta vulgaris HOM05D008976 ORTHO05D011121 4.4e-06 57.0 122 28.7
EL10Ac5g11650 Beta vulgaris HOM05D008976 ORTHO05D011121 4.4e-06 57.0 126 25.4
EL10Ac7g17245 Beta vulgaris HOM05D008976 ORTHO05D011121 4.4e-06 57.0 275 22.9
HanXRQChr05g0132981 Helianthus annuus HOM05D003915 ORTHO05D005386 4.4e-06 57.0 198 24.7
HanXRQChr13g0401811 Helianthus annuus HOM05D000003 ORTHO05D000004 4.4e-06 57.0 236 22.9
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.8e-06 56.6 89 25.8
EL10Ac1g02070 Beta vulgaris HOM05D008976 ORTHO05D011121 5.8e-06 56.6 126 27.0
HanXRQChr05g0136121 Helianthus annuus HOM05D000003 ORTHO05D000004 5.8e-06 56.6 185 25.9
Lsat_1_v5_gn_1_31001 Lactuca sativa HOM05D003915 ORTHO05D005386 5.8e-06 56.6 126 26.2
Ah.05g173080 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.6e-06 56.2 91 26.4
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.6e-06 56.2 78 32.1
Ah.11g041130 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.6e-06 56.2 119 30.3
Lsat_1_v5_gn_2_130020 Lactuca sativa HOM05D003915 ORTHO05D005386 7.6e-06 56.2 197 25.4
Medtr7g108760 Medicago truncatula HOM05D008558 ORTHO05D000006 9.9e-06 55.8 100 30.0
Medtr8g058470 Medicago truncatula HOM05D008558 ORTHO05D000006 9.9e-06 55.8 100 30.0
vmacro11925 Vaccinium macrocarpon HOM05D000203 ORTHO05D009356 9.9e-06 55.8 78 32.1


User provided reference genes

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