Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002240 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-63 245.7 113 100.0
Sc02g0004050 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.0e-12 77.0 84 41.7
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.6e-12 74.3 99 36.4
Sc16g0005360 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.5e-11 72.4 85 38.8
Sc22g0003950 Simmondsia chinensis HOM05D008762 ORTHO05D011252 1.2e-10 70.1 82 40.2
Sc10g0004010 Simmondsia chinensis HOM05D031748 ORTHO05D011057 1.6e-10 69.7 67 50.7
Sc06g0004260 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.7e-10 68.2 84 39.3
Actinidia04023 Actinidia chinensis HOM05D012898 ORTHO05D011057 1.1e-09 67.0 72 40.3
Sc06g0006000 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.4e-09 66.6 85 38.8
Sc26g0001380 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.4e-09 66.6 85 38.8
Sc01g0006920 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.3e-09 65.9 82 37.8
Sc12g0005710 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.1e-09 65.5 102 32.4
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 4.0e-09 65.1 82 41.5
Sc01g0005690 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.2e-09 64.7 98 34.7
Sc13g0005400 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.2e-09 64.7 90 37.8
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 6.8e-09 64.3 84 33.3
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 1.5e-08 63.2 82 37.8
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.0e-08 62.8 80 33.8
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 3.4e-08 62.0 78 37.2
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 7.5e-08 60.8 80 37.5
Rhsim01G0127900 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.9e-08 60.5 65 40.0
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.3e-07 60.1 77 33.8
Sc10g0006460 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-07 59.7 91 34.1
Sc04g0003750 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.2e-07 59.3 78 35.9
Sc11g0005100 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.2e-07 59.3 92 34.8
Sc20g0002870 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.2e-07 59.3 88 33.0
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.9e-07 58.9 86 33.7
Sc16g0003440 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.9e-07 58.9 63 41.3
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 3.7e-07 58.5 97 36.1
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.9e-07 58.2 81 30.9
Lj6g0008950 Lotus japonicus HOM05D019244 ORTHO05D036501 4.9e-07 58.2 86 30.2
LjContig00272g0003214 Lotus japonicus HOM05D019244 ORTHO05D036501 4.9e-07 58.2 86 30.2
Sc25g0003910 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.9e-07 58.2 71 38.0
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 6.4e-07 57.8 111 29.7
Sc15g0003590 Simmondsia chinensis HOM05D009209 ORTHO05D011057 8.3e-07 57.4 81 35.8
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 1.1e-06 57.0 81 38.3
LjContig00127g0011774 Lotus japonicus HOM05D008220 ORTHO05D010358 1.1e-06 57.0 78 34.6
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.4e-06 56.6 83 37.3
Lj3g0027860 Lotus japonicus HOM05D008220 ORTHO05D010358 1.4e-06 56.6 78 34.6
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 1.9e-06 56.2 64 42.2
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.4e-06 55.8 78 35.9
arahy.Tifrunner.gnm1.ann1.S43GAM Arachis hypogaea HOM05D000142 ORTHO05D000124 2.4e-06 55.8 88 36.4
Sc22g0002690 Simmondsia chinensis HOM05D000043 ORTHO05D030613 2.4e-06 55.8 98 33.7
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 3.2e-06 55.5 95 29.5
Dinv25837 Davidia involucrata HOM05D000142 ORTHO05D000124 3.2e-06 55.5 81 39.5
Sc16g0006020 Simmondsia chinensis HOM05D006933 ORTHO05D009629 3.2e-06 55.5 63 42.9
Ah.11g040120 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-06 55.1 81 27.2
Ah.14g081710 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-06 55.1 88 30.7
Migut.N01014 Erythranthe guttata HOM05D000142 ORTHO05D000124 4.1e-06 55.1 81 39.5
Sc02g0003510 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.1e-06 55.1 89 32.6
CSS0043342 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 5.4e-06 54.7 92 37.0
Sp6g36670 Schrenkiella parvula HOM05D000142 ORTHO05D000124 5.4e-06 54.7 74 41.9
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.1e-06 54.3 86 34.9
MBI15_g36093_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.1e-06 54.3 78 30.8
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 7.1e-06 54.3 78 32.1
Aa31LG7G3390 Aethionema arabicum HOM05D000142 ORTHO05D000124 9.2e-06 53.9 77 40.3
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 9.2e-06 53.9 52 44.2


User provided reference genes

Program Settings