Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 0.0e+00 1294.6 647 100.0
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.3e-245 853.2 630 68.1
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.9e-245 851.3 597 71.2
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.4e-244 849.7 599 71.5
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 6.2e-240 834.3 622 68.6
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 4.9e-237 824.7 608 68.9
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 3.0e-234 815.5 619 66.9
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.0e-229 800.4 600 68.0
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.7e-229 799.7 601 66.9
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.2e-229 799.3 609 67.7
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 2.3e-226 789.3 605 65.5
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 8.7e-226 787.3 611 65.1
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.5e-225 786.6 605 65.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 9.7e-225 783.9 606 65.7
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 9.7e-225 783.9 610 65.1
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 6.3e-224 781.2 606 65.8
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 6.3e-224 781.2 618 65.0
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 8.2e-224 780.8 581 66.1
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 9.0e-223 777.3 588 66.7
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.0e-222 776.2 628 63.7
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.9e-222 774.6 613 63.1
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.7e-222 774.2 628 63.5
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 7.7e-222 774.2 594 66.2
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 7.7e-222 774.2 634 63.6
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.0e-221 773.9 605 64.6
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.7e-221 773.1 609 65.4
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 2.2e-221 772.7 624 63.6
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.5e-220 769.2 603 65.0
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.6e-219 765.0 583 65.5
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.0e-218 763.8 607 64.4
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.0e-218 763.8 624 63.1
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.8e-218 763.1 581 65.2
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 8.8e-218 760.8 608 63.8
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 8.8e-218 760.8 609 63.5
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 7.4e-217 757.7 605 63.1
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 3.7e-216 755.4 619 60.9
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.7e-216 755.4 614 62.7
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 6.3e-216 754.6 579 64.4
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.1e-215 753.8 608 62.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.4e-215 752.7 595 64.5
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 3.1e-215 752.3 579 64.8
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 3.1e-215 752.3 597 64.3
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 4.1e-215 751.9 618 63.6
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 6.9e-215 751.1 628 61.8
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 9.1e-215 750.7 599 63.3
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 2.6e-214 749.2 608 64.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 2.6e-214 749.2 615 62.9
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 3.8e-213 745.3 617 60.9
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 5.0e-213 745.0 627 60.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 5.0e-213 745.0 580 64.7
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.4e-212 743.4 637 59.0
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.9e-212 743.0 593 63.2
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 2.5e-212 742.7 604 63.4
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 7.2e-212 741.1 597 62.3
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 7.2e-212 741.1 604 63.1
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.6e-211 740.0 616 62.3
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 3.6e-211 738.8 600 63.8
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 4.7e-211 738.4 628 60.4
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 7.9e-211 737.6 596 61.9
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 7.9e-211 737.6 600 63.0
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.4e-210 736.9 578 64.2
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 2.3e-210 736.1 590 62.4
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 2.3e-210 736.1 629 60.7
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 3.0e-210 735.7 634 59.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.0e-210 735.7 614 61.7
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 3.0e-210 735.7 606 63.5
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 5.1e-210 734.9 576 64.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.5e-209 733.4 600 62.2
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.5e-209 733.4 626 60.7
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.5e-209 733.4 605 62.8
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 2.0e-209 733.0 607 61.8
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 5.7e-209 731.5 591 61.8
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 5.7e-209 731.5 578 63.7
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 7.4e-209 731.1 603 62.2
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 9.7e-209 730.7 598 62.7
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.7e-208 729.9 603 61.7
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.2e-208 729.6 599 63.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 8.2e-208 727.6 628 59.4
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.1e-207 727.2 606 60.7
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.8e-207 726.5 589 61.8
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 4.1e-207 725.3 620 60.5
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 5.3e-207 724.9 606 62.0
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 3.4e-206 722.2 598 60.5
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.9e-204 716.5 600 61.0
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 2.5e-204 716.1 600 61.2
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 7.2e-204 714.5 578 63.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.0e-202 710.7 601 60.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 3.0e-202 709.1 600 60.2
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 6.7e-202 708.0 591 60.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.7e-200 703.4 600 59.2
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 9.1e-199 697.6 600 60.2
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.6e-198 696.8 617 58.7
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.6e-198 696.0 523 65.6
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 5.9e-198 694.9 546 64.1
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 3.8e-197 692.2 637 57.5
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.9e-196 689.9 503 68.0
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 9.7e-193 677.6 615 57.9
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.7e-192 676.8 595 57.3
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 3.1e-191 672.5 538 63.9
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.7e-184 650.2 566 59.4
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 7.0e-183 644.8 543 60.2
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.6e-182 643.7 580 58.6
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.6e-171 607.1 595 53.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.5e-161 573.9 636 49.2
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 9.2e-151 538.1 575 51.8
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.0e-150 535.4 580 49.5
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 8.7e-141 505.0 439 57.9
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 8.1e-139 498.4 430 57.0
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 7.6e-129 465.3 527 47.4
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 6.0e-126 455.7 608 42.9
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 9.3e-119 431.8 769 36.8
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.2e-104 384.0 505 44.8
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 3.8e-104 383.3 327 62.1
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 8.5e-104 382.1 503 42.9
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 3.9e-101 373.2 394 50.3
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 2.1e-86 324.3 204 73.5
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.7e-72 278.1 218 64.7
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 4.2e-71 273.5 614 33.7
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 6.8e-69 266.2 328 49.4
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 2.8e-67 260.8 204 62.7
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.4e-61 241.9 205 56.6
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 1.3e-59 235.3 226 52.2
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 4.9e-59 233.4 652 31.0
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 4.6e-57 226.9 682 30.6
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.9e-56 223.8 634 30.0
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 6.4e-51 206.5 387 39.0
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.8e-45 188.3 268 43.7
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.2e-45 186.8 268 43.7
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 1.5e-39 168.7 118 69.5
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 3.1e-37 161.0 145 54.5
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 4.0e-37 160.6 110 75.5
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 8.9e-37 159.5 111 70.3
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.4e-34 150.2 287 36.2
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.6e-33 147.1 206 39.3
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.3e-31 141.0 236 41.9
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.6e-31 139.4 236 41.5
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 9.6e-31 139.4 236 41.5
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.6e-31 139.4 236 41.5
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.6e-31 139.4 236 41.5
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.2e-30 139.0 141 56.7
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 9.9e-28 129.4 109 58.7
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.7e-24 118.6 158 44.3
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.0e-24 117.9 158 44.3
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.9e-24 117.5 158 43.7
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.5e-23 115.5 157 44.6
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.6e-22 112.1 166 39.8
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.5e-20 105.5 73 68.5
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 2.6e-20 104.8 60 88.3
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 1.9e-18 98.6 111 45.0
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.4e-18 98.2 62 80.6
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.1e-17 95.1 62 79.0
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.4e-12 77.8 48 70.8
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 4.6e-09 67.4 79 49.4
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.3e-08 65.9 40 70.0
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 3.0e-08 64.7 79 48.1


User provided reference genes

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