Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 0.0e+00 1182.9 616 100.0
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 9.0e-297 1023.1 607 86.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.4e-289 999.2 607 82.5
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.9e-289 996.9 607 82.2
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.4e-281 972.6 607 83.4
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.2e-274 946.8 606 80.0
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.4e-272 941.4 606 80.2
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.9e-271 938.3 606 80.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.4e-270 936.0 606 81.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 9.4e-270 933.3 603 81.1
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.1e-269 932.2 606 79.9
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.7e-269 931.8 606 80.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 6.1e-269 930.6 606 79.7
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.5e-267 926.0 606 80.2
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.7e-266 922.5 608 78.5
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 3.7e-266 921.4 606 79.5
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.8e-265 919.1 606 79.4
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.4e-265 918.7 606 78.9
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.2e-264 916.4 606 79.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 5.9e-264 914.1 606 78.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 7.7e-264 913.7 606 79.2
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.7e-263 912.5 606 79.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 6.5e-263 910.6 606 77.7
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-262 909.8 606 79.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.5e-262 909.4 606 79.0
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.9e-262 909.1 606 78.5
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.5e-262 908.7 606 78.4
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 5.5e-262 907.5 606 77.4
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 2.3e-260 902.1 607 76.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 2.6e-259 898.7 606 77.2
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 5.7e-259 897.5 607 78.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.7e-258 896.0 608 76.6
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.7e-258 896.0 606 78.1
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.8e-258 895.2 606 77.4
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.8e-258 895.2 606 77.4
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.8e-258 895.2 608 77.3
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.8e-258 895.2 608 76.5
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.4e-257 892.9 609 75.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.4e-257 892.1 606 76.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.3e-257 891.0 606 76.7
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 9.1e-257 890.2 607 77.1
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.2e-256 889.8 607 75.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.2e-256 889.8 609 75.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.6e-256 889.4 608 76.6
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.0e-255 886.7 609 75.2
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.3e-255 886.3 609 75.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 2.2e-255 885.6 607 76.8
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 5.0e-255 884.4 617 75.5
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.9e-254 882.5 606 76.4
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.2e-254 881.7 608 75.2
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 3.6e-253 878.2 607 76.6
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.8e-252 875.9 606 75.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.3e-252 875.5 607 75.1
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.3e-252 875.5 606 75.6
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 4.0e-252 874.8 606 76.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.2e-252 874.4 606 74.9
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.2e-251 873.2 608 75.0
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.2e-251 873.2 618 74.9
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 3.4e-251 871.7 607 75.0
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.4e-251 871.3 608 75.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.2e-250 869.0 606 75.4
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.2e-250 869.0 606 75.1
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 8.3e-250 867.1 606 74.6
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.1e-249 866.7 606 74.8
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.4e-249 866.3 606 75.4
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-248 862.4 611 74.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 4.5e-248 861.3 606 74.3
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 4.5e-248 861.3 606 74.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 5.9e-248 860.9 606 74.9
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.3e-247 859.8 609 74.9
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.7e-247 859.4 609 74.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.9e-247 858.6 615 73.7
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 5.0e-247 857.8 610 75.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.1e-246 856.7 609 74.2
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-246 856.7 609 74.2
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.1e-246 856.7 609 74.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.9e-246 855.9 606 73.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.5e-246 855.5 607 74.1
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.1e-245 852.4 606 73.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.7e-245 851.3 608 73.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 4.0e-244 848.2 611 74.1
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.2e-244 847.8 610 73.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 8.8e-244 847.0 605 72.6
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.4e-243 845.1 613 74.4
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.7e-243 844.3 608 71.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.9e-242 841.3 606 73.4
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.4e-241 839.7 606 73.4
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.8e-241 839.3 604 72.7
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 3.5e-240 835.1 611 71.2
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.5e-240 835.1 606 71.8
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 6.6e-239 830.9 605 72.9
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.5e-238 829.7 614 71.5
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.5e-238 829.7 607 72.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.9e-238 829.3 621 70.9
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 6.1e-237 824.3 607 71.7
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 5.2e-236 821.2 607 71.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 6.8e-236 820.8 607 70.5
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.8e-232 807.4 606 71.3
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.0e-231 807.0 605 71.2
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.7e-231 806.2 611 70.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.9e-230 802.7 610 70.2
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-229 799.7 561 75.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.0e-228 795.0 606 68.2
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 5.2e-228 794.7 608 69.7
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.0e-227 792.7 606 68.8
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.6e-227 792.3 565 71.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.5e-222 776.5 623 68.9
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-222 775.0 606 68.6
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 9.5e-222 773.9 615 67.0
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.6e-221 771.9 650 65.5
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.8e-220 767.7 615 66.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.2e-219 766.9 606 68.3
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 3.2e-217 758.8 606 68.0
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 3.5e-216 755.4 537 74.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-214 750.0 608 66.6
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.3e-212 742.7 620 64.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 4.0e-212 741.9 608 65.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 4.3e-206 721.8 606 64.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.6e-203 712.6 580 65.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.9e-194 681.8 469 74.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.1e-180 637.5 446 76.5
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-173 614.0 607 57.8
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.4e-163 579.3 534 62.5
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 6.7e-159 565.1 613 52.0
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 3.2e-153 546.2 618 47.9
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.3e-151 540.0 613 51.9
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 6.1e-136 488.8 617 50.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.5e-129 466.8 629 43.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.6e-128 464.2 582 46.6
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 6.6e-90 335.9 209 78.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.1e-88 328.9 242 66.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 3.5e-83 313.5 324 54.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 6.0e-75 286.2 610 34.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.9e-65 254.6 216 63.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 8.2e-64 249.2 251 58.6
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.5e-57 227.6 604 29.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.9e-55 219.5 151 74.8
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 9.3e-52 209.1 148 72.3
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.7e-38 162.9 201 47.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 3.1e-31 141.0 606 24.4
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 5.3e-31 140.2 98 68.4
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.7e-24 117.5 77 70.1
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 7.7e-22 109.8 77 64.9
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 6.5e-21 106.7 77 63.6
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 3.6e-19 100.9 120 43.3
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 1.0e-18 99.4 227 42.3
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.4e-15 87.0 59 72.9
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.0e-13 82.8 99 46.5
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.5e-09 68.9 100 42.0


User provided reference genes

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