Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.4e-104 381.7 197 100.0
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.9e-76 288.5 197 72.6
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 3.9e-76 288.5 191 74.3
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.1e-75 287.0 191 75.4
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.8e-73 279.6 191 72.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 1.8e-73 279.6 191 71.7
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 2.4e-73 279.3 191 70.2
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.1e-73 278.9 195 69.7
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 3.1e-73 278.9 191 71.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.0e-73 278.5 195 69.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 8.9e-73 277.3 187 72.7
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.0e-72 276.2 187 74.9
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 2.0e-72 276.2 195 68.2
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 3.4e-72 275.4 191 69.6
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 4.4e-72 275.0 191 70.7
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 5.8e-72 274.6 191 72.3
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 7.6e-72 274.2 191 71.2
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 9.9e-72 273.9 191 72.3
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 9.9e-72 273.9 191 71.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.3e-71 273.5 191 70.7
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.2e-71 272.7 187 70.6
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.2e-71 272.7 197 69.5
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.9e-71 272.3 191 68.6
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 2.9e-71 272.3 191 70.2
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.9e-71 271.6 194 67.0
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 4.9e-71 271.6 191 68.1
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 6.4e-71 271.2 195 70.3
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 6.4e-71 271.2 183 72.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 8.4e-71 270.8 191 70.7
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.1e-70 270.4 191 69.6
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.4e-70 270.0 191 69.6
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.4e-70 270.0 195 68.2
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.9e-70 269.6 191 68.6
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.9e-70 269.6 191 69.6
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.2e-70 268.9 191 69.1
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 3.2e-70 268.9 191 67.5
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 5.4e-70 268.1 191 71.7
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 7.1e-70 267.7 191 68.6
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 7.1e-70 267.7 189 66.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 9.3e-70 267.3 195 66.7
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 9.3e-70 267.3 191 70.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.2e-69 266.9 192 68.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.2e-69 266.9 188 70.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.2e-69 266.9 195 66.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.6e-69 266.5 195 68.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.1e-69 266.2 191 70.7
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 3.5e-69 265.4 195 66.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 3.5e-69 265.4 191 65.4
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 3.5e-69 265.4 191 68.1
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 4.6e-69 265.0 194 65.5
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 4.6e-69 265.0 191 67.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 6.0e-69 264.6 191 68.6
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 7.8e-69 264.2 195 67.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 7.8e-69 264.2 195 66.7
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.8e-69 264.2 191 67.0
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 7.8e-69 264.2 191 65.4
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 7.8e-69 264.2 191 64.9
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 7.8e-69 264.2 191 66.0
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.3e-68 263.5 191 67.5
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.7e-68 263.1 193 66.8
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.7e-68 263.1 195 66.2
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.7e-68 263.1 195 66.2
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.7e-68 263.1 191 65.4
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.7e-68 263.1 183 68.9
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.0e-68 262.3 186 68.8
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.0e-68 262.3 191 68.1
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 3.0e-68 262.3 191 65.4
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 3.9e-68 261.9 191 64.9
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 3.9e-68 261.9 191 67.0
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.9e-68 261.9 197 64.0
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 3.9e-68 261.9 190 65.3
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 3.9e-68 261.9 186 68.8
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.9e-68 261.9 195 65.6
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 6.6e-68 261.2 184 69.0
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 6.6e-68 261.2 187 67.4
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 6.6e-68 261.2 191 67.0
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 8.7e-68 260.8 191 67.0
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 8.7e-68 260.8 191 67.0
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.1e-67 260.4 191 66.5
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.5e-67 260.0 184 68.5
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.5e-67 260.0 184 68.5
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.5e-67 260.0 183 69.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.5e-67 259.2 195 66.2
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 3.3e-67 258.8 186 70.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.3e-67 258.8 191 66.0
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 4.3e-67 258.5 191 67.5
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 4.3e-67 258.5 189 64.6
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.3e-66 256.9 190 68.4
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.1e-66 256.1 191 64.9
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.8e-66 255.8 191 66.5
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.8e-66 255.8 191 66.0
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 4.8e-66 255.0 191 64.4
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 8.1e-66 254.2 195 64.6
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 8.1e-66 254.2 191 62.8
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.1e-65 253.8 191 64.9
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.4e-65 253.4 191 64.9
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.8e-65 253.1 195 62.1
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.4e-65 252.7 193 65.3
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 4.0e-65 251.9 191 64.9
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 9.0e-65 250.8 191 63.4
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.2e-64 250.4 191 64.4
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.6e-64 249.2 191 62.8
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.6e-64 249.2 191 63.4
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 9.9e-64 247.3 193 62.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.2e-63 246.1 191 64.4
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.9e-63 245.7 185 65.4
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 3.8e-63 245.4 183 67.2
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.9e-62 243.0 191 63.4
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.2e-62 242.3 191 63.9
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 7.1e-62 241.1 195 61.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.2e-61 240.4 197 59.4
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 4.6e-61 238.4 189 64.6
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.0e-60 237.3 191 62.8
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.3e-60 236.9 187 63.6
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-60 236.9 191 61.3
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.1e-60 235.0 171 64.9
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 2.4e-57 226.1 188 56.4
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.9e-55 219.2 183 59.6
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.2e-54 215.7 143 72.0
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.6e-53 213.4 191 55.5
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 2.7e-53 212.6 144 72.2
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 3.5e-53 212.2 187 55.1
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.0e-52 210.7 187 56.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.3e-52 210.3 166 64.5
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 3.9e-52 208.8 144 67.4
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 2.9e-47 192.6 148 66.2
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 4.9e-47 191.8 144 63.2
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.9e-47 191.8 162 61.7
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.4e-46 190.3 191 55.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 7.9e-45 184.5 181 48.6
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.5e-43 179.5 155 56.8
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 5.0e-39 165.2 181 49.2
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 6.5e-39 164.9 114 65.8
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 8.7e-36 154.5 97 72.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.9e-35 153.3 191 47.1
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 3.3e-35 152.5 191 48.2
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 2.4e-33 146.4 117 62.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.4e-32 142.5 180 46.1
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 5.5e-30 135.2 179 42.5
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 4.2e-22 109.0 68 73.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 9.4e-22 107.8 72 66.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.6e-21 107.1 118 53.4
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 4.7e-21 105.5 186 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 3.9e-20 102.4 128 46.9
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 3.3e-19 99.4 121 47.9
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.2e-18 96.7 188 36.7
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 6.3e-18 95.1 127 41.7
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.0e-15 85.5 109 45.0
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 7.2e-14 81.6 58 70.7
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.7e-13 79.0 70 54.3


User provided reference genes

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