Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001970 Simmondsia chinensis HOM05D006751 ORTHO05D008710 5.7e-52 207.2 98 100.0
Sc17g0001950 Simmondsia chinensis HOM05D006751 ORTHO05D009307 4.6e-38 161.0 123 69.1
EL10Ac7g17934 Beta vulgaris HOM05D006751 ORTHO05D008710 1.1e-31 139.8 123 56.9
AUR62016527 Chenopodium quinoa HOM05D006751 ORTHO05D008710 7.2e-31 137.1 123 57.7
AUR62001149 Chenopodium quinoa HOM05D006751 ORTHO05D008710 1.6e-30 136.0 123 56.9
Hund05587 Selenicereus undatus HOM05D006751 ORTHO05D008710 2.3e-29 132.1 123 54.5
EL10Ac5g11653 Beta vulgaris HOM05D006751 ORTHO05D008710 5.1e-29 131.0 123 55.3
Dinv28842 Davidia involucrata HOM05D006751 ORTHO05D008710 9.1e-26 120.2 124 52.4
Lj1C90G7 Lonicera japonica HOM05D006751 ORTHO05D008710 3.8e-24 114.8 124 50.0
Hund18452 Selenicereus undatus HOM05D006751 ORTHO05D008710 3.8e-24 114.8 95 61.1
Thecc.01G216700 Theobroma cacao HOM05D006751 ORTHO05D008710 3.8e-24 114.8 124 49.2
QL09p049892 Quercus lobata HOM05D006751 ORTHO05D008710 1.1e-23 113.2 124 49.2
Eucgr.H00756 Eucalyptus grandis HOM05D006751 ORTHO05D008710 2.5e-23 112.1 124 46.8
TAR636G1901 Trochodendron aralioides HOM05D006751 ORTHO05D008710 2.5e-23 112.1 123 51.2
TWI18G0571 Tripterygium wilfordii HOM05D006751 ORTHO05D008710 4.2e-23 111.3 124 46.0
Cfa010403 Carpinus fangiana HOM05D006751 ORTHO05D008710 5.5e-23 110.9 124 47.6
Atru.chr6.1445 Acer truncatum HOM05D006751 ORTHO05D008710 1.2e-22 109.8 124 45.2
Prupe.8G196400 Prunus persica HOM05D006751 ORTHO05D008710 1.2e-22 109.8 124 47.6
Manes.12G049300 Manihot esculenta HOM05D006751 ORTHO05D008710 1.6e-22 109.4 123 48.0
Rhsim01G0251000 Rhododendron simsii HOM05D006751 ORTHO05D008710 2.7e-22 108.6 124 47.6
Atru.chr6.1446 Acer truncatum HOM05D006751 ORTHO05D008710 4.7e-22 107.8 124 44.4
GSVIVG01004748001 Vitis vinifera HOM05D006751 ORTHO05D008710 1.4e-21 106.3 125 48.0
CiPaw.13G050300 Carya illinoinensis HOM05D006751 ORTHO05D008710 3.0e-21 105.1 124 48.4
Glyma.18G158800 Glycine max HOM05D006751 ORTHO05D008710 3.0e-21 105.1 126 46.8
Actinidia09459 Actinidia chinensis HOM05D006751 ORTHO05D008710 4.0e-21 104.8 124 47.6
Hma1.2p1_0149F.1_g066540 Hydrangea macrophylla HOM05D006751 ORTHO05D008710 5.2e-21 104.4 124 45.2
PSO017G4001 Papaver somniferum HOM05D006751 ORTHO05D008710 8.8e-21 103.6 124 46.8
arahy.Tifrunner.gnm1.ann1.5UHD3M Arachis hypogaea HOM05D006751 ORTHO05D008710 2.0e-20 102.4 125 45.6
Lsat_1_v5_gn_9_17301 Lactuca sativa HOM05D006751 ORTHO05D008710 2.0e-20 102.4 115 48.7
MD05G1169200 Malus domestica HOM05D006751 ORTHO05D008710 2.6e-20 102.1 124 46.0
Potri.002G247400 Populus trichocarpa HOM05D006751 ORTHO05D008710 3.3e-20 101.7 121 43.8
Sabra02G0188300 Salix brachista HOM05D006751 ORTHO05D008710 3.3e-20 101.7 123 43.9
Phvul.008G132700 Phaseolus vulgaris HOM05D006751 ORTHO05D008710 4.4e-20 101.3 123 45.5
RcHm_v2.0_Chr6g0283741 Rosa chinensis HOM05D006751 ORTHO05D008710 4.4e-20 101.3 124 45.2
Actinidia23767 Actinidia chinensis HOM05D006751 ORTHO05D008710 5.7e-20 100.9 124 45.2
MSTRG.18827 Avicennia marina HOM05D006751 ORTHO05D008710 5.7e-20 100.9 122 47.5
arahy.Tifrunner.gnm1.ann1.HN87AT Arachis hypogaea HOM05D006751 ORTHO05D008710 7.4e-20 100.5 125 44.8
Ciclev10020463m.g Citrus clementina HOM05D006751 ORTHO05D008710 9.7e-20 100.1 124 43.5
Oeu003263.2 Olea europaea HOM05D006751 ORTHO05D008710 9.7e-20 100.1 124 44.4
vmacro14722 Vaccinium macrocarpon HOM05D006751 ORTHO05D008710 9.7e-20 100.1 121 45.5
VMungo1383G3158 Vigna mungo HOM05D006751 ORTHO05D008710 1.3e-19 99.8 125 44.8
FvH4_2g18360 Fragaria vesca HOM05D006751 ORTHO05D008710 1.7e-19 99.4 124 44.4
FAN24G0495 Fragaria x ananassa HOM05D006751 ORTHO05D008710 1.7e-19 99.4 124 44.4
Oeu041603.1 Olea europaea HOM05D006751 ORTHO05D008710 8.2e-19 97.1 123 43.9
TPR.G28325 Trifolium pratense HOM05D006751 ORTHO05D008710 8.2e-19 97.1 125 44.0
Lj1g0007193 Lotus japonicus HOM05D006751 ORTHO05D008710 1.1e-18 96.7 123 43.9
Psat3g149800 Pisum sativum HOM05D006751 ORTHO05D008710 1.1e-18 96.7 126 43.7
Lalb_Chr03g0041361 Lupinus albus HOM05D006751 ORTHO05D008710 1.4e-18 96.3 123 42.3
Cc01_g16530 Coffea canephora HOM05D006751 ORTHO05D008710 1.8e-18 95.9 123 43.9
Peaxi162Scf01312g00069 Petunia axillaris HOM05D006751 ORTHO05D008710 2.4e-18 95.5 119 44.5
Thecc.01G216600 Theobroma cacao HOM05D006751 ORTHO05D008710 2.4e-18 95.5 124 41.1
Nitab4.5_0003020g0170 Nicotiana tabacum HOM05D006751 ORTHO05D008710 4.1e-18 94.7 124 45.2
Duzib133G0478 Durio zibethinus HOM05D006751 ORTHO05D008710 5.3e-18 94.4 124 41.9
DCAR_012676 Daucus carota HOM05D006751 ORTHO05D008710 7.0e-18 94.0 123 44.7
FvH4_2g18361 Fragaria vesca HOM05D006751 ORTHO05D008710 7.0e-18 94.0 119 43.7
Migut.O00924 Erythranthe guttata HOM05D006751 ORTHO05D008710 9.1e-18 93.6 122 42.6
MBI16_g06251_MAGBIO Magnolia biondii HOM05D006751 ORTHO05D008710 9.1e-18 93.6 123 46.3
Nn1g08194 Nelumbo nucifera HOM05D006751 ORTHO05D008710 9.1e-18 93.6 124 43.5
PGR083G0288 Punica granatum HOM05D006751 ORTHO05D008710 1.2e-17 93.2 123 43.1
PSO063G4788 Papaver somniferum HOM05D006751 ORTHO05D008710 2.6e-17 92.0 123 44.7
Medtr7g055720 Medicago truncatula HOM05D006751 ORTHO05D008710 3.5e-17 91.7 124 42.7
Ca_07507_v3 Cicer arietinum L. HOM05D006751 ORTHO05D008710 5.9e-17 90.9 124 41.1
Sopen06g034610 Solanum pennellii HOM05D006751 ORTHO05D008710 5.9e-17 90.9 119 43.7
FAN15G3221 Fragaria x ananassa HOM05D006751 ORTHO05D008710 7.7e-17 90.5 119 42.0
PGSC0003DMG400020172 Solanum tuberosum HOM05D006751 ORTHO05D008710 2.2e-16 89.0 119 42.9
Sed0014566 Sechium edule HOM05D006751 ORTHO05D008710 2.9e-16 88.6 121 42.1
Solyc06g083220.3 Solanum lycopersicum HOM05D006751 ORTHO05D008710 2.9e-16 88.6 119 42.9
Cpa.g.sc8.122 Carica papaya HOM05D006751 ORTHO05D008710 6.5e-16 87.4 121 38.8
HanXRQChr07g0193061 Helianthus annuus HOM05D006751 ORTHO05D008710 6.5e-16 87.4 121 42.1
ClCG09G008710 Citrullus lanatus HOM05D006751 ORTHO05D008710 1.1e-15 86.7 121 41.3
AL9U11370 Arabidopsis lyrata HOM05D006751 ORTHO05D008710 2.5e-15 85.5 119 41.2
CsaV3_7G026250 Cucumis sativus L. HOM05D006751 ORTHO05D008710 2.5e-15 85.5 121 40.5
Peaxi162Scf01312g00068 Petunia axillaris HOM05D006751 ORTHO05D008710 2.5e-15 85.5 121 43.8
MELO3C021072.2 Cucumis melo HOM05D006751 ORTHO05D008710 3.2e-15 85.1 121 40.5
Medtr7g055730 Medicago truncatula HOM05D006751 ORTHO05D008710 4.2e-15 84.7 126 41.3
Sp7g10140 Schrenkiella parvula HOM05D006751 ORTHO05D008710 2.7e-14 82.0 119 40.3
Aa31LG9G5060 Aethionema arabicum HOM05D006751 ORTHO05D008710 3.6e-14 81.6 121 37.2
HanXRQChr10g0316091 Helianthus annuus HOM05D006751 ORTHO05D008710 3.6e-14 81.6 101 43.6
Os05g0274300 Oryza sativa ssp. japonica HOM05D006751 ORTHO05D008710 3.6e-14 81.6 121 42.1
THA.LOC104821658 Tarenaya hassleriana HOM05D006751 ORTHO05D008710 4.7e-14 81.3 122 36.9
TPR.G29151 Trifolium pratense HOM05D006751 ORTHO05D008710 4.7e-14 81.3 125 39.2
Gohir.D11G146600 Gossypium hirsutum HOM05D006751 ORTHO05D008710 1.0e-13 80.1 118 39.8
COL.COLO4_16111 Corchorus olitorius HOM05D006751 ORTHO05D008710 1.4e-13 79.7 123 36.6
Gorai.007G157000 Gossypium raimondii HOM05D006751 ORTHO05D008710 2.3e-13 79.0 124 38.7
Aqoxy2G03936 Aquilegia oxysepala HOM05D006751 ORTHO05D008710 6.8e-13 77.4 116 39.7
Migut.D02514 Erythranthe guttata HOM05D006751 ORTHO05D008710 1.5e-12 76.3 121 38.8
BcaB04g17726 Brassica carinata HOM05D006751 ORTHO05D008710 4.4e-12 74.7 119 37.8
BcaC07g37406 Brassica carinata HOM05D006751 ORTHO05D008710 5.7e-12 74.3 119 38.7
A08p07190 Brassica napus HOM05D006751 ORTHO05D008710 5.7e-12 74.3 119 38.7
C08p08830 Brassica napus HOM05D006751 ORTHO05D008710 5.7e-12 74.3 119 38.7
BolC8t47729H Brassica oleracea HOM05D006751 ORTHO05D008710 5.7e-12 74.3 119 38.7
BraA08t32731Z Brassica rapa HOM05D006751 ORTHO05D008710 5.7e-12 74.3 119 38.7
Gohir.A11G140300 Gossypium hirsutum HOM05D006751 ORTHO05D008710 9.8e-12 73.6 124 37.1
AT4G13030 Arabidopsis thaliana HOM05D006751 ORTHO05D008710 1.3e-11 73.2 119 37.0
CARHR218330 Cardamine hirsuta HOM05D006751 ORTHO05D008710 2.2e-11 72.4 116 37.9
HPP92_016887 Vanilla planifolia HOM05D006751 ORTHO05D008710 3.7e-11 71.6 119 33.6
CSS0035402 Camellia sinensis var. sinensis HOM05D006751 ORTHO05D008710 8.3e-11 70.5 88 43.2
Carub.0007s2974 Capsella rubella HOM05D006751 ORTHO05D008710 8.3e-11 70.5 91 41.8
SEGI_02078 Sequoiadendron giganteum HOM05D006751 ORTHO05D008710 1.1e-10 70.1 121 33.9
Haze_03352 Corylus avellana HOM05D006751 ORTHO05D008710 2.4e-10 68.9 103 38.8
Zm00001eb261870 Zea mays HOM05D006751 ORTHO05D008710 2.4e-10 68.9 120 34.2
Zm00001eb318450 Zea mays HOM05D006751 ORTHO05D008710 1.7e-08 62.8 117 33.3
FAN27G0238 Fragaria x ananassa HOM05D006751 ORTHO05D009307 1.5e-07 59.7 48 52.1
FAN27G0294 Fragaria x ananassa HOM05D006751 ORTHO05D008710 1.5e-07 59.7 48 52.1
MD10G1157500 Malus domestica HOM05D006751 ORTHO05D008710 5.5e-07 57.8 51 49.0
ATR0681G155 Amborella trichopoda HOM05D006751 ORTHO05D008710 7.2e-07 57.4 127 31.5


User provided reference genes

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