Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.2e-136 490.0 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 88.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 88.5
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 88.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.2
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 86.6
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 86.6
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 86.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 86.6
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 86.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.6e-120 435.6 262 87.4
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 86.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 86.3
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 86.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 85.9
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.0
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.3
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 86.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 85.1
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 86.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 86.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 8.4e-119 430.6 263 86.7
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 86.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.9
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.2e-118 428.7 261 85.4
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 9.3e-118 427.2 263 85.9
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 85.5
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.7
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.7
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.1
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 85.5
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 83.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 85.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-116 423.3 263 85.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.5
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.1
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.3e-116 422.5 263 84.0
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.0e-116 422.2 259 86.1
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 82.1
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 3.9e-116 421.8 262 83.2
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.7
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 82.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 85.5
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 84.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 82.8
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 81.7
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 83.6
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 82.4
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 83.6
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.1
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 83.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 81.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 80.9
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.6
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 81.7
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 82.8
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 81.3
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 81.7
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 85.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 80.9
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 80.9
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.2
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 81.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.8e-113 412.9 262 83.2
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.4e-113 412.5 262 82.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 81.7
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.9e-113 411.0 262 80.2
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 80.9
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 80.5
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 80.5
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.6e-112 409.1 262 81.3
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 81.3
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 9.9e-112 407.1 262 80.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.7e-111 406.4 262 82.4
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.7e-111 406.4 263 83.3
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.9e-111 405.6 262 82.1
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 2.5e-110 402.5 247 87.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.5e-110 401.4 264 80.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 7.1e-110 401.0 245 87.3
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 7.1e-110 401.0 252 82.5
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.3e-110 400.6 262 81.3
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.2e-109 400.2 264 80.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 2.1e-109 399.4 247 86.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.1e-109 399.4 264 79.2
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 79.8
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 77.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 78.7
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 82.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 82.5
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.9e-107 392.9 239 86.6
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 4.3e-107 391.7 264 81.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 79.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 78.6
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.3e-105 384.8 262 76.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.3
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.3
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.3
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.3
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 76.7
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 76.3
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 76.7
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 76.3
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 76.3
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 76.3
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.0e-104 382.9 262 76.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 80.2
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 76.3
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 76.3
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 5.8e-104 381.3 262 76.3
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 76.0
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.2e-103 379.4 262 76.0
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.9e-103 379.0 263 76.0
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.9e-103 379.0 263 76.0
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.9e-103 379.0 263 76.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.8e-103 378.6 262 75.6
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 4.9e-103 378.3 248 81.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 6.5e-103 377.9 263 79.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 5.5e-102 374.8 270 74.4
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.1e-102 374.4 263 77.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.3e-100 370.2 270 74.1
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.5e-99 366.7 264 76.1
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.2e-98 360.9 262 74.8
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.8e-97 359.8 218 87.2
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.8e-95 352.1 241 80.5
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.8e-95 352.1 249 72.7
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 8.5e-95 350.9 262 72.9
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.7e-93 345.9 210 86.7
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.7e-92 341.3 234 76.1
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.3e-91 338.6 214 84.1
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 5.7e-91 338.2 226 77.9
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.3e-90 334.7 219 78.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.2e-90 334.3 229 74.2
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.2e-87 326.2 262 68.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.1e-86 323.9 263 64.6
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.3e-84 316.2 218 75.2
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.8e-79 298.9 267 61.0
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.9e-78 296.6 247 68.4
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.2e-78 295.8 254 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.5e-78 295.0 218 69.7
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.1e-77 291.6 232 64.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.0e-76 290.8 204 77.5
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.2e-72 277.3 253 62.5
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.0e-72 276.6 208 68.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 8.0e-69 264.6 270 57.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 3.0e-68 262.7 263 58.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.0e-68 262.7 262 61.5
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 3.5e-64 249.2 211 63.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.5e-59 231.5 240 57.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 6.3e-58 228.4 244 52.9
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.2e-54 214.9 130 82.3
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.0e-51 206.8 120 89.2
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 5.7e-51 205.3 196 56.1
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 7.0e-49 198.4 138 76.1
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 4.7e-45 185.7 179 59.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 8.9e-44 181.4 118 78.8
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.4e-35 152.9 191 50.3
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.7e-34 149.4 141 61.0
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.8e-28 128.6 96 65.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.4e-25 120.2 69 92.8


User provided reference genes

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