Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.5e-73 277.3 144 100.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 4.2e-64 248.1 144 87.5
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 5.5e-64 247.7 142 87.3
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-63 246.5 144 88.2
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.2e-63 246.5 144 88.2
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 3.6e-63 245.0 142 88.7
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 8.0e-63 243.8 144 86.1
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.0e-62 243.4 144 87.5
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.0e-62 243.4 144 86.1
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.0e-62 243.4 144 86.1
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.0e-62 243.4 144 86.1
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.0e-62 243.4 144 86.8
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.4e-62 243.0 144 86.8
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.8e-62 242.7 144 88.2
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.8e-62 242.7 144 87.5
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.8e-62 242.7 144 87.5
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.8e-62 242.7 144 87.5
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.3e-62 242.3 144 86.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 4.0e-62 241.5 144 85.4
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 5.2e-62 241.1 144 84.7
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.2e-62 241.1 144 86.8
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 6.8e-62 240.7 143 87.4
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 6.8e-62 240.7 144 85.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 6.8e-62 240.7 144 85.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 6.8e-62 240.7 144 87.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 8.9e-62 240.4 144 86.8
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 8.9e-62 240.4 144 86.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.2e-61 240.0 143 86.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.2e-61 240.0 144 84.0
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.0e-61 239.2 144 84.0
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.0e-61 239.2 144 85.4
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 2.6e-61 238.8 144 85.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.4e-61 238.4 144 85.4
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.4e-61 238.4 144 84.7
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.4e-61 238.0 141 85.1
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 4.4e-61 238.0 144 83.3
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 5.7e-61 237.7 144 85.4
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.3e-60 236.5 144 83.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.3e-60 236.5 144 84.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.7e-60 236.1 144 84.7
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 4.9e-60 234.6 144 82.6
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 4.9e-60 234.6 144 82.6
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 4.9e-60 234.6 144 82.6
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 4.9e-60 234.6 137 85.4
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 8.3e-60 233.8 143 84.6
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.4e-59 233.0 144 83.3
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.4e-59 233.0 144 81.9
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.4e-59 233.0 144 84.0
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.8e-59 232.6 144 84.0
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.8e-59 232.6 144 84.0
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.8e-59 232.6 141 84.4
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.8e-59 232.6 144 84.0
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.4e-59 232.3 144 83.3
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.4e-59 232.3 144 79.9
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 2.0e-58 229.2 144 80.6
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-58 228.8 141 83.7
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.7e-58 228.8 143 81.1
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 3.5e-58 228.4 143 80.4
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 3.5e-58 228.4 136 83.8
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 3.5e-58 228.4 143 80.4
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.7e-57 226.1 182 69.8
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.3e-56 221.9 143 81.1
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.6e-55 219.5 142 78.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 3.6e-55 218.4 143 79.0
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 4.7e-55 218.0 143 79.7
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 4.7e-55 218.0 143 79.0
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 6.1e-55 217.6 144 77.1
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 8.0e-55 217.2 143 79.7
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 8.0e-55 217.2 142 78.2
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.2e-54 214.5 144 77.8
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 5.2e-54 214.5 143 78.3
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 6.8e-54 214.2 142 76.8
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 8.9e-54 213.8 142 76.8
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.0e-53 212.6 143 77.6
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.0e-53 212.6 143 77.6
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 2.0e-53 212.6 143 77.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.0e-53 212.6 143 77.6
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.0e-53 212.6 143 77.6
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 5.8e-53 211.1 143 78.3
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 5.8e-53 211.1 143 78.3
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.4e-51 206.5 139 74.8
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 7.0e-51 204.1 136 77.9
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 4.6e-50 201.4 142 73.2
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.3e-49 199.9 142 71.1
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.5e-48 196.4 141 68.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.9e-48 196.1 143 69.9
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 4.3e-48 194.9 143 69.9
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.4e-46 189.9 140 69.3
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.3e-46 189.1 140 68.6
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.3e-46 189.1 140 69.3
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 5.2e-46 188.0 114 83.3
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.0e-45 186.0 142 67.6
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 3.2e-43 178.7 138 64.5
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.1e-42 176.0 141 63.1
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.1e-42 176.0 107 84.1
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.7e-42 175.6 138 64.5
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.0e-41 173.7 105 83.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.3e-41 172.6 138 62.3
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.9e-41 171.8 141 66.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 8.1e-39 164.1 125 68.0
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.4e-37 158.7 125 66.4
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 9.9e-37 157.1 101 78.2
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.1e-35 153.7 108 75.9
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 4.1e-35 151.8 170 50.0
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.5e-32 143.3 100 75.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.3e-32 141.7 139 52.5
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.2e-30 134.8 125 56.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.2e-28 129.4 74 86.5
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 2.2e-28 129.4 104 67.3
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 2.4e-27 125.9 138 47.8
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 4.1e-27 125.2 137 46.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.9e-25 118.6 68 88.2
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 8.4e-20 100.9 54 88.9
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.2e-19 98.6 64 75.0
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.2e-12 76.3 43 79.1
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.1e-11 73.9 42 88.1
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.2e-10 70.5 43 79.1
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-10 70.5 43 79.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.0e-09 65.9 38 86.8


User provided reference genes

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