Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 4.9e-165 584.3 283 100.0
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.9e-116 422.9 246 78.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.6e-115 419.9 248 78.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.7e-115 419.1 246 76.8
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 6.1e-115 417.9 259 77.6
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 6.1e-115 417.9 247 78.5
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 2.3e-114 416.0 246 76.0
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 3.9e-114 415.2 246 76.4
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 5.2e-114 414.8 246 76.0
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.1e-113 413.7 246 77.2
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 2.0e-113 412.9 250 75.2
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 4.4e-113 411.8 246 75.2
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.3e-112 410.2 246 76.8
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.7e-112 409.8 246 76.0
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 8.2e-112 407.5 246 76.0
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 3.1e-111 405.6 248 73.8
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 4.1e-111 405.2 248 75.4
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 4.1e-111 405.2 246 76.0
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 5.3e-111 404.8 246 78.0
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 7.0e-111 404.4 247 74.5
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.6e-110 403.3 246 74.8
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 2.0e-110 402.9 246 75.2
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 2.0e-110 402.9 246 75.6
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.6e-110 402.5 246 76.4
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 4.5e-110 401.7 246 74.4
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 4.5e-110 401.7 257 73.5
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 4.5e-110 401.7 247 75.7
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 7.7e-110 401.0 262 71.4
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 7.7e-110 401.0 246 75.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.0e-109 400.6 271 69.4
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.0e-109 400.6 256 73.4
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.2e-109 399.4 247 73.3
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.9e-109 399.1 271 69.0
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 2.9e-109 399.1 245 73.5
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 6.5e-109 397.9 245 73.9
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 6.5e-109 397.9 245 73.9
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 6.5e-109 397.9 245 73.9
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 8.5e-109 397.5 248 71.8
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 8.5e-109 397.5 263 70.3
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.1e-108 397.1 254 73.2
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.9e-108 396.4 229 78.6
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.9e-108 396.4 250 73.2
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.9e-108 396.4 254 72.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.2e-108 395.6 244 74.6
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 4.2e-108 395.2 231 77.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 4.2e-108 395.2 231 77.9
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 9.4e-108 394.0 261 68.2
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 9.4e-108 394.0 246 74.0
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.1e-107 392.9 257 68.9
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.1e-107 392.9 249 71.5
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.7e-107 392.5 253 70.0
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 3.6e-107 392.1 248 73.8
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 6.1e-107 391.3 246 72.0
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.4e-106 390.2 286 64.3
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.3e-106 389.4 249 70.7
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.0e-106 389.0 247 72.5
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 4.0e-106 388.7 244 72.5
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 5.2e-106 388.3 255 71.0
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.5e-105 386.7 247 74.5
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 7.5e-105 384.4 244 71.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.7e-104 383.3 246 71.5
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 8.2e-104 380.9 231 75.3
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 4.1e-103 378.6 268 65.3
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 7.0e-103 377.9 248 71.8
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.6e-102 376.7 246 71.1
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 4.5e-102 375.2 246 69.1
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 4.5e-102 375.2 246 70.3
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.0e-101 374.0 248 69.4
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.3e-101 373.6 248 71.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 3.8e-101 372.1 246 68.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-100 370.5 253 69.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-100 370.5 253 69.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.2e-100 369.0 247 70.9
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.2e-100 368.6 253 66.8
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.2e-100 368.6 246 67.5
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.0e-98 364.0 253 67.6
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 3.0e-98 362.5 279 62.0
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 3.0e-98 362.5 230 73.0
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 4.0e-98 362.1 223 74.4
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 6.8e-98 361.3 260 64.6
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.2e-96 356.3 246 67.5
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.8e-96 355.1 246 67.5
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 8.3e-96 354.4 253 66.4
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 3.1e-95 352.4 248 69.4
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.7e-94 349.4 248 69.0
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.7e-93 346.7 250 65.2
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 7.2e-92 341.3 208 75.0
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.1e-91 339.7 246 67.5
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 3.6e-91 339.0 249 64.3
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.8e-90 336.7 259 66.0
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 4.0e-90 335.5 248 65.3
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 7.0e-79 298.1 247 57.1
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.5e-78 295.8 246 58.9
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.9e-76 290.0 250 58.8
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.3e-76 289.3 265 55.8
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.3e-74 283.1 179 71.5
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 6.4e-72 275.0 151 81.5
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.6e-70 270.4 188 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.7e-70 269.6 215 60.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.7e-69 266.9 236 54.2
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.3e-68 262.3 173 69.4
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 4.6e-62 242.3 177 66.1
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 5.8e-57 225.3 174 62.6
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 5.1e-53 212.2 264 43.6
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.7e-45 187.2 244 41.4
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 2.0e-41 173.7 157 56.1
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 7.6e-41 171.8 197 44.7
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.9e-37 159.5 105 70.5
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.6e-35 154.1 99 71.7
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 4.8e-35 152.5 128 57.8
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.9e-33 144.8 98 68.4
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.4e-31 140.2 121 57.9
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 7.9e-30 135.2 105 56.2
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.3e-29 133.7 92 72.8
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.3e-24 117.9 178 38.8
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.7e-24 117.5 150 42.7
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 4.2e-23 112.8 119 47.1
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 5.5e-23 112.5 119 47.9
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 2.8e-19 100.1 65 67.7
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.4e-18 97.1 61 75.4
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 3.4e-17 93.2 137 40.9
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 5.9e-17 92.4 143 37.8
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-14 84.0 214 31.3
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 2.5e-12 77.0 116 39.7
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 6.3e-11 72.4 56 55.4
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.7e-08 64.3 116 36.2
Migut.H00023 Erythranthe guttata HOM05D001287 ORTHO05D001226 2.9e-08 63.5 218 28.0
FvH4_6g53220 Fragaria vesca HOM05D001287 ORTHO05D001226 6.5e-08 62.4 216 24.5
FAN14G2453 Fragaria x ananassa HOM05D001287 ORTHO05D001226 6.5e-08 62.4 216 24.5
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 6.5e-08 62.4 41 63.4
FAN02G1279 Fragaria x ananassa HOM05D001287 ORTHO05D001226 8.5e-08 62.0 223 25.1
FAN09G3185 Fragaria x ananassa HOM05D001287 ORTHO05D001226 1.1e-07 61.6 214 24.3
TWI12G0558 Tripterygium wilfordii HOM05D001287 ORTHO05D001226 1.1e-07 61.6 251 24.7
RcHm_v2.0_Chr2g0175311 Rosa chinensis HOM05D001287 ORTHO05D001226 1.4e-07 61.2 214 24.3
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-07 61.2 120 32.5
CiPaw.03G054200 Carya illinoinensis HOM05D001287 ORTHO05D001226 1.9e-07 60.8 222 23.9
Lalb_Chr02g0157741 Lupinus albus HOM05D001287 ORTHO05D001226 1.9e-07 60.8 217 25.3
Aa31LG1G13610 Aethionema arabicum HOM05D001287 ORTHO05D001226 3.2e-07 60.1 252 24.2
Cfa007241 Carpinus fangiana HOM05D001287 ORTHO05D001226 3.2e-07 60.1 255 23.5
Haze_14859 Corylus avellana HOM05D001287 ORTHO05D001226 3.2e-07 60.1 254 23.6
FAN05G3807 Fragaria x ananassa HOM05D001287 ORTHO05D001226 4.2e-07 59.7 214 24.3
Solyc06g065580.3 Solanum lycopersicum HOM05D001287 ORTHO05D001226 7.2e-07 58.9 216 24.5
Sopen06g024100 Solanum pennellii HOM05D001287 ORTHO05D001226 7.2e-07 58.9 216 24.5
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 7.2e-07 58.9 212 25.0
MD17G1013500 Malus domestica HOM05D001287 ORTHO05D001226 1.2e-06 58.2 215 25.1
RcHm_v2.0_Chr2g0143071 Rosa chinensis HOM05D001287 ORTHO05D001226 1.6e-06 57.8 214 23.4
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-06 57.4 95 37.9
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 2.7e-06 57.0 61 45.9
Sc07g0004140 Simmondsia chinensis HOM05D001287 ORTHO05D001226 2.7e-06 57.0 209 23.4
Peaxi162Scf00075g01933 Petunia axillaris HOM05D001287 ORTHO05D001226 3.6e-06 56.6 214 24.3
PGSC0003DMG400026129 Solanum tuberosum HOM05D001287 ORTHO05D001226 3.6e-06 56.6 204 25.0
CAN.G199.37 Capsicum annuum HOM05D001287 ORTHO05D001226 7.9e-06 55.5 235 24.3
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 7.9e-06 55.5 50 58.0


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