Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1217.2 619 100.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 1.1e-286 989.6 588 82.5
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 1.5e-283 979.2 590 80.2
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 1.5e-283 979.2 588 80.8
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 2.6e-283 978.4 585 82.6
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 4.4e-283 977.6 589 81.2
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 5.7e-283 977.2 589 81.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 2.8e-282 974.9 588 81.0
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 8.2e-282 973.4 590 80.3
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 1.8e-281 972.2 590 80.2
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 5.3e-281 970.7 591 80.7
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.2e-280 969.5 589 80.5
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 5.9e-280 967.2 588 80.3
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.7e-280 966.8 589 80.3
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 2.2e-279 965.3 588 79.8
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 2.2e-279 965.3 588 79.4
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 2.9e-279 964.9 585 80.7
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 3.8e-279 964.5 589 80.1
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 1.1e-278 963.0 588 79.6
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 1.5e-278 962.6 588 79.3
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 2.5e-278 961.8 588 79.9
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 3.2e-278 961.4 588 79.8
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 7.2e-278 960.3 583 79.8
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 9.4e-278 959.9 588 79.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 1.6e-277 959.1 583 80.8
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.6e-277 959.1 588 79.3
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 2.7e-277 958.4 588 79.1
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 4.7e-277 957.6 588 79.3
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 1.8e-276 955.7 583 78.4
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 2.3e-276 955.3 588 79.3
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 4.0e-276 954.5 590 78.8
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 4.0e-276 954.5 588 78.6
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 6.7e-276 953.7 583 78.7
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 8.8e-276 953.4 583 78.6
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 8.8e-276 953.4 590 79.0
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 2.0e-275 952.2 584 79.5
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 2.6e-275 951.8 583 79.4
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 4.4e-275 951.0 583 78.9
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 1.3e-274 949.5 587 79.0
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 3.7e-274 948.0 588 78.9
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 4.8e-274 947.6 588 78.2
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 8.2e-274 946.8 595 78.8
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 8.2e-274 946.8 588 78.2
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 8.2e-274 946.8 588 78.2
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 1.1e-273 946.4 611 76.3
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 1.1e-273 946.4 583 79.1
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 1.8e-273 945.7 588 78.4
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 2.4e-273 945.3 631 74.6
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 2.4e-273 945.3 583 79.1
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 5.3e-273 944.1 588 77.9
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 2.0e-272 942.2 590 77.6
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.0e-272 942.2 589 78.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 2.0e-272 942.2 588 77.2
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 2.7e-272 941.8 588 78.9
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 4.5e-272 941.0 583 79.4
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.7e-272 940.3 589 78.8
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 7.7e-272 940.3 588 78.2
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.0e-271 939.9 590 77.5
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 1.0e-271 939.9 590 77.8
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 1.3e-271 939.5 581 78.1
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 1.3e-271 939.5 588 77.6
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 1.7e-271 939.1 588 77.7
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 5.0e-271 937.6 583 77.9
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 6.5e-271 937.2 588 78.7
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 8.5e-271 936.8 588 77.2
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 1.9e-270 935.6 583 77.7
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 1.9e-270 935.6 580 77.8
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 2.5e-270 935.3 609 75.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 5.5e-270 934.1 590 77.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 7.2e-270 933.7 583 77.9
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 1.2e-269 932.9 588 77.0
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 2.1e-269 932.2 588 77.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 6.1e-269 930.6 588 77.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.3e-268 928.7 589 76.4
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.0e-268 927.9 613 74.7
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.6e-267 925.2 635 73.2
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.4e-267 924.5 585 77.3
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 4.4e-267 924.5 582 77.7
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 9.8e-267 923.3 614 74.3
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 9.8e-267 923.3 588 76.9
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.7e-266 922.5 589 77.1
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 8.3e-266 920.2 588 76.7
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 1.8e-265 919.1 588 75.7
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 2.4e-265 918.7 588 76.0
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 5.4e-265 917.5 588 76.7
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.2e-264 916.4 590 76.3
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 1.2e-264 916.4 590 76.1
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 1.2e-264 916.4 589 76.2
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 2.7e-264 915.2 589 77.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 2.7e-264 915.2 588 76.9
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 7.7e-264 913.7 591 76.5
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 7.7e-264 913.7 589 75.7
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 1.3e-263 912.9 590 75.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.3e-263 912.9 588 76.5
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 1.7e-263 912.5 590 75.8
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 2.2e-263 912.1 591 76.1
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.9e-263 911.8 590 75.9
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 2.9e-263 911.8 588 74.8
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 5.0e-263 911.0 591 76.3
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 5.0e-263 911.0 591 76.1
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 6.5e-263 910.6 622 72.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 8.5e-263 910.2 590 75.4
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.5e-262 909.4 590 75.3
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 3.2e-262 908.3 590 75.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 2.1e-261 905.6 590 75.6
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 6.8e-260 900.6 583 75.8
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 2.6e-259 898.7 589 75.9
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 5.7e-259 897.5 588 74.5
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.7e-258 894.8 589 74.9
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 1.6e-256 889.4 588 73.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 5.9e-256 887.5 588 74.1
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.8e-253 878.6 549 80.1
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 4.7e-253 877.9 588 75.5
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 3.4e-251 871.7 604 72.7
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.8e-251 870.2 589 74.9
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 9.8e-251 870.2 605 73.1
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 8.3e-250 867.1 584 71.7
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.6e-248 862.8 589 72.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 2.7e-248 862.1 589 73.9
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.7e-248 862.1 593 70.5
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 4.6e-248 861.3 593 70.5
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.5e-246 855.5 589 73.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.6e-245 851.7 553 77.2
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.3e-244 849.0 590 73.2
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 4.6e-240 834.7 585 70.1
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 8.1e-237 823.9 589 71.5
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.5e-235 819.7 587 70.4
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 7.5e-235 817.4 681 62.6
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 8.6e-231 803.9 588 66.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.2e-229 800.0 588 68.5
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 3.8e-226 788.5 574 70.4
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.6e-224 783.1 570 66.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 4.7e-221 771.5 588 64.8
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 7.1e-217 757.7 588 65.3
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.7e-216 755.7 588 62.8
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.9e-215 751.9 588 63.8
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.4e-212 742.7 638 61.4
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.4e-211 738.8 588 60.7
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.2e-210 736.1 588 61.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 6.4e-210 734.6 588 65.5
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.5e-206 723.4 585 61.5
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.4e-196 690.3 544 61.6
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.5e-190 669.5 556 57.2
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 2.8e-189 666.0 560 55.5
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 6.5e-186 654.8 562 56.0
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 4.2e-177 625.5 607 57.0
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 9.4e-177 624.4 591 57.5
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.8e-172 610.1 584 51.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 4.8e-165 585.5 585 53.2
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.0e-138 498.0 293 84.0
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 7.3e-137 491.9 593 47.4
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.0e-130 471.5 529 46.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.2e-108 396.7 493 46.2
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.8e-103 380.9 552 38.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.7e-101 374.4 401 53.4
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.9e-97 360.9 217 83.4
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.2e-91 341.7 264 64.0
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 7.6e-86 322.4 215 73.5
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.8e-85 320.1 669 32.0
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.2e-84 317.0 225 66.2
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.6e-75 288.1 264 56.8
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.8e-74 284.6 207 66.7
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 6.1e-67 259.6 175 70.3
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 6.3e-64 249.6 506 31.8
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.4e-63 247.7 520 29.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.5e-62 243.4 157 77.1
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 4.0e-26 124.0 164 47.6
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.1e-20 105.9 74 73.0
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.1e-19 101.7 118 52.5
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 2.8e-19 101.3 63 74.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.2e-08 65.1 47 61.7
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.2e-08 65.1 73 52.1


User provided reference genes

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