Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.7e-64 248.1 160 100.0
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.5e-25 120.2 167 50.9
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.3e-17 92.4 177 35.0
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 3.1e-15 85.9 166 41.6
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 8.4e-13 77.8 137 40.1
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 4.2e-12 75.5 136 35.3
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.2e-12 75.5 137 38.0
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.6e-11 73.6 173 31.2
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.1e-11 73.2 136 36.8
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.7e-11 72.8 158 34.8
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 4.6e-11 72.0 139 33.8
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.6e-11 72.0 139 33.8
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 4.6e-11 72.0 139 33.8
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.6e-11 72.0 139 33.8
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-11 72.0 165 31.5
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 7.9e-11 71.2 144 36.8
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.0e-10 70.9 139 32.4
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.0e-10 70.9 159 35.8
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.0e-10 70.9 142 36.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-10 70.1 140 32.1
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.8e-10 70.1 140 32.9
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.3e-10 69.7 131 42.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-10 69.7 161 37.9
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.3e-10 69.7 136 36.0
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.0e-10 69.3 139 35.3
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 3.9e-10 68.9 144 32.6
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 3.9e-10 68.9 138 36.2
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.9e-10 68.9 138 31.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.9e-10 68.9 138 31.9
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.9e-10 68.9 176 28.4
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 5.1e-10 68.6 142 38.7
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 5.1e-10 68.6 110 37.3
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 6.7e-10 68.2 136 32.4
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 6.7e-10 68.2 149 34.9
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 8.7e-10 67.8 140 30.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 8.7e-10 67.8 140 30.0
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-09 67.4 143 33.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-09 67.4 140 31.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-09 67.4 120 36.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-09 67.4 152 32.9
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.5e-09 67.0 144 38.2
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-09 67.0 183 27.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.5e-09 67.0 173 27.7
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.5e-09 67.0 122 35.2
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.5e-09 67.0 133 35.3
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.9e-09 66.6 108 38.0
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-09 66.6 158 29.7
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.5e-09 66.2 140 32.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-09 66.2 146 34.9
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 3.3e-09 65.9 142 38.0
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-09 65.9 147 34.0
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.3e-09 65.9 140 35.7
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 4.3e-09 65.5 142 38.0
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 4.3e-09 65.5 142 38.0
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 4.3e-09 65.5 142 38.0
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 4.3e-09 65.5 136 52.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.3e-09 65.5 146 32.2
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 4.3e-09 65.5 170 30.6
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 7.4e-09 64.7 149 34.9
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 7.4e-09 64.7 141 31.2
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 7.4e-09 64.7 136 35.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 7.4e-09 64.7 140 30.7
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 9.7e-09 64.3 129 33.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 9.7e-09 64.3 136 37.5
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 9.7e-09 64.3 112 36.6
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.3e-08 63.9 143 37.8
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.3e-08 63.9 163 31.9
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.3e-08 63.9 133 54.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.3e-08 63.9 137 36.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.3e-08 63.9 144 31.2
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.3e-08 63.9 139 31.7
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.3e-08 63.9 140 35.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.6e-08 63.5 136 50.7
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-08 63.5 182 27.5
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.6e-08 63.5 175 28.0
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.6e-08 63.5 139 33.8
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.6e-08 63.5 141 31.9
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-08 63.2 113 35.4
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.2e-08 63.2 112 36.6
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.7e-08 62.4 145 33.8
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 6.3e-08 61.6 133 49.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 6.3e-08 61.6 143 30.1
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 6.3e-08 61.6 138 33.3
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.2e-08 61.2 155 30.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 8.2e-08 61.2 168 28.0
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 8.2e-08 61.2 139 33.8
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.1e-07 60.8 118 34.7
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.4e-07 60.5 131 49.6
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.4e-07 60.5 143 33.6
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-07 60.5 160 30.6
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.4e-07 60.5 154 31.8
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.4e-07 60.5 144 34.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-07 60.1 160 30.0
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.8e-07 60.1 167 26.3
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.8e-07 60.1 139 32.4
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.4e-07 59.7 146 31.5
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-07 59.3 156 29.5
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 3.1e-07 59.3 131 42.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 3.1e-07 59.3 140 30.7
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 3.1e-07 59.3 141 34.8
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 4.1e-07 58.9 111 32.4
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.1e-07 58.9 152 32.9
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 5.3e-07 58.5 114 36.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.9e-07 58.2 154 29.2
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 6.9e-07 58.2 138 34.8
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 6.9e-07 58.2 130 33.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 9.0e-07 57.8 168 29.8
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 9.0e-07 57.8 114 35.1
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 9.0e-07 57.8 158 32.9
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.2e-06 57.4 138 31.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.2e-06 57.4 168 26.8
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.2e-06 57.4 135 33.3
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.2e-06 57.4 162 30.9
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-06 57.0 179 29.6
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.5e-06 57.0 138 39.9
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.5e-06 57.0 136 39.0
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.0e-06 56.6 146 28.8
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.0e-06 56.6 145 29.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.0e-06 56.6 135 40.0
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.6e-06 56.2 145 28.3
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.6e-06 56.2 119 32.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.4e-06 55.8 140 32.1
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 3.4e-06 55.8 147 32.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 4.5e-06 55.5 164 29.9
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.5e-06 55.5 164 29.9
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.5e-06 55.5 164 29.9
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 4.5e-06 55.5 195 34.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 4.5e-06 55.5 137 30.7
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 5.9e-06 55.1 138 37.0
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 7.7e-06 54.7 159 25.8
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 7.7e-06 54.7 144 31.9
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.0e-05 54.3 143 33.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.0e-05 54.3 126 34.1
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.0e-05 54.3 140 29.3


User provided reference genes

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