Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 4.0e-231 804.3 373 100.0
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.7e-178 627.5 352 80.4
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.4e-172 609.8 353 77.6
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.5e-172 609.0 360 76.4
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.5e-172 607.8 406 70.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.6e-171 606.3 349 77.9
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.9e-171 604.0 349 77.4
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.2e-160 569.3 370 70.0
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.1e-156 557.0 360 70.6
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.2e-156 555.1 362 69.6
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.1e-155 552.7 362 69.3
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 6.1e-155 551.2 362 69.3
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.1e-155 551.2 362 69.3
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-154 550.4 368 70.7
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 3.3e-153 545.4 362 68.0
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-153 545.4 370 68.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.8e-152 542.3 357 67.2
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.8e-152 542.3 363 67.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.8e-151 539.7 345 69.6
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 9.1e-151 537.3 361 69.5
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.9e-150 534.6 341 70.4
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 5.9e-150 534.6 347 69.2
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 7.7e-150 534.3 357 69.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 7.7e-150 534.3 355 68.7
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 3.8e-149 531.9 361 68.1
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.0e-149 531.6 357 67.8
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 6.5e-149 531.2 359 67.7
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 6.5e-149 531.2 372 65.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.5e-149 530.8 360 66.7
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.9e-148 529.6 365 67.1
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 4.2e-148 528.5 361 68.4
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 7.2e-148 527.7 351 69.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.2e-147 526.9 360 67.5
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.2e-147 526.9 368 67.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.2e-147 526.9 376 64.6
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 7.9e-147 524.2 357 67.8
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.0e-146 523.9 350 68.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.8e-146 523.1 359 65.7
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.3e-146 522.7 336 69.6
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 5.2e-146 521.5 353 66.0
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.7e-146 521.2 363 66.4
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 6.7e-146 521.2 331 71.0
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.8e-146 520.8 353 67.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 8.8e-146 520.8 339 70.5
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 8.8e-146 520.8 345 68.1
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-145 520.0 332 70.8
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 3.3e-145 518.8 357 65.3
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 5.7e-145 518.1 352 68.5
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.3e-144 516.9 355 67.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.7e-144 516.5 358 65.6
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.2e-144 516.2 331 70.7
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.8e-144 515.8 363 64.7
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 2.8e-144 515.8 363 64.2
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.8e-144 515.8 350 68.0
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.8e-144 515.8 361 64.5
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 4.8e-144 515.0 335 70.4
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 6.3e-144 514.6 358 65.1
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 8.2e-144 514.2 363 64.2
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.4e-143 513.5 341 68.6
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.4e-143 513.5 360 64.4
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.8e-143 513.1 357 65.5
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 2.4e-143 512.7 336 68.8
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.4e-143 512.7 360 66.4
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 4.1e-143 511.9 341 66.9
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 5.3e-143 511.5 360 64.4
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.2e-142 510.4 345 66.1
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.0e-142 509.6 363 63.6
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.0e-142 509.6 363 63.6
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.0e-142 509.6 360 63.3
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 3.5e-142 508.8 360 64.7
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 5.9e-142 508.1 362 63.5
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.9e-142 508.1 357 65.3
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 7.7e-142 507.7 363 63.6
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.7e-141 506.5 363 63.4
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.7e-141 506.5 363 64.7
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.8e-141 505.4 360 65.6
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.8e-141 505.4 308 72.4
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 5.0e-141 505.0 364 63.7
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 6.5e-141 504.6 363 62.5
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 6.5e-141 504.6 363 62.5
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 8.5e-141 504.2 363 62.5
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 1.1e-140 503.8 341 66.6
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.9e-140 503.1 457 54.0
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 7.2e-140 501.1 363 62.5
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.6e-139 500.0 342 66.1
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.1e-139 499.6 368 63.6
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 8.0e-139 497.7 360 63.1
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.3e-138 496.1 360 63.1
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 5.2e-138 495.0 342 64.9
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.2e-138 495.0 360 62.8
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 8.8e-138 494.2 356 61.5
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.2e-137 493.8 359 62.1
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 4.8e-136 488.4 354 63.8
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.4e-135 486.9 448 52.9
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 7.0e-135 484.6 312 69.9
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 7.0e-135 484.6 359 63.8
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 9.1e-135 484.2 342 64.3
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.7e-134 482.6 361 60.9
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.1e-132 477.2 341 61.9
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.5e-132 476.9 365 61.4
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.2e-131 473.8 364 62.6
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.1e-131 473.0 336 65.2
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.8e-130 469.9 352 63.9
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.0e-130 468.8 360 61.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.0e-130 468.8 360 61.4
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 7.5e-129 464.5 355 60.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.1e-127 460.7 348 61.2
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 5.2e-122 441.8 314 64.3
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 8.9e-122 441.0 288 69.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.2e-121 440.7 353 59.5
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-121 439.9 288 68.8
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-120 436.8 288 68.4
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 4.4e-113 412.1 266 69.9
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 2.3e-109 399.8 270 68.9
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.6e-107 393.7 263 68.1
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.0e-106 389.0 343 55.1
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 7.0e-103 378.3 293 58.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.5e-100 370.5 319 55.8
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.7e-96 355.9 230 67.4
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.6e-94 350.5 362 46.7
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.6e-94 349.0 222 69.4
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.5e-92 341.3 254 62.2
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.7e-86 323.2 343 46.4
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.6e-86 322.4 349 48.4
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.6e-86 322.4 214 65.4
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.0e-85 321.2 199 72.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.7e-83 312.4 268 55.2
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.8e-82 310.5 358 43.3
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.2e-82 308.9 359 42.9
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 3.2e-79 299.7 218 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 4.8e-75 285.8 303 46.2
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-73 280.8 207 63.8
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.9e-73 278.1 195 66.2
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.4e-72 275.4 185 64.9
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.6e-70 269.2 167 73.7
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.9e-58 228.8 153 67.3
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.3e-53 214.5 154 61.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 5.1e-53 212.6 241 45.6
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 2.5e-47 193.7 143 64.3
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 4.2e-39 166.4 226 41.2
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.5e-28 131.3 101 64.4
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 7.4e-28 129.0 106 56.6
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.8e-27 126.3 101 56.4
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 6.5e-24 115.9 98 50.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.0e-21 108.6 99 51.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.4e-13 81.6 109 36.7
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 8.6e-08 62.4 40 65.0


User provided reference genes

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