Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.8e-118 427.6 212 100.0
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 4.3e-57 225.3 216 57.9
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 3.7e-56 222.2 144 70.8
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.8e-55 219.9 116 81.9
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 3.1e-55 219.2 160 65.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.9e-55 218.0 164 62.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 6.9e-55 218.0 108 88.0
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 9.0e-55 217.6 149 68.5
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 9.0e-55 217.6 161 64.0
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.2e-54 217.2 137 75.2
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.2e-54 217.2 166 63.9
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.5e-54 216.9 158 67.1
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.6e-54 216.1 161 65.8
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.5e-54 215.3 126 78.6
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 5.9e-54 214.9 178 62.4
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 5.9e-54 214.9 180 62.8
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 7.7e-54 214.5 144 67.4
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.0e-53 214.2 108 85.2
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.0e-53 214.2 171 62.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.0e-53 214.2 174 60.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.3e-53 213.8 194 58.2
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.3e-53 213.8 156 64.7
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.3e-53 213.8 166 60.8
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.7e-53 213.4 108 85.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.7e-53 213.4 131 74.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.7e-53 213.4 200 56.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.2e-53 213.0 113 79.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.2e-53 213.0 187 61.0
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.2e-53 213.0 182 62.1
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 2.9e-53 212.6 147 70.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 2.9e-53 212.6 108 85.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.8e-53 212.2 186 61.3
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.0e-53 211.8 175 62.9
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 6.5e-53 211.5 138 71.7
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 8.5e-53 211.1 132 73.5
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.9e-52 209.9 113 81.4
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 2.5e-52 209.5 115 78.3
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.5e-52 209.5 174 59.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.5e-52 209.5 175 61.7
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.5e-52 209.5 107 83.2
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.5e-52 209.5 108 86.1
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.2e-52 209.1 150 66.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.2e-52 208.8 148 66.9
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 4.2e-52 208.8 114 78.1
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 5.5e-52 208.4 108 83.3
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 7.2e-52 208.0 108 80.6
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 9.4e-52 207.6 142 68.3
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 9.4e-52 207.6 116 76.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.2e-51 207.2 108 80.6
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.6e-51 206.8 119 76.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 3.6e-51 205.7 107 80.4
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 6.1e-51 204.9 161 65.2
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 6.1e-51 204.9 108 80.6
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 7.9e-51 204.5 190 55.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.0e-50 204.1 174 58.0
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.0e-50 204.1 113 78.8
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.0e-50 204.1 190 55.8
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.8e-50 203.4 179 58.1
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.8e-50 203.4 119 75.6
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.8e-50 203.4 139 64.7
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.3e-50 203.0 148 63.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.3e-50 203.0 149 67.8
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-50 202.6 116 75.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-50 202.6 116 75.0
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 3.0e-50 202.6 185 56.2
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.9e-50 202.2 124 70.2
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.9e-50 202.2 182 59.3
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.1e-50 201.8 179 57.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 5.1e-50 201.8 163 59.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.1e-49 200.7 180 56.7
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.5e-49 200.3 157 60.5
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-49 199.9 156 60.9
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.5e-49 199.5 131 67.2
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.3e-49 199.1 166 57.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.7e-49 197.6 171 57.9
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.7e-49 197.6 162 56.8
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.3e-48 197.2 198 54.0
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.3e-48 197.2 108 77.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.2e-48 196.4 151 62.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.2e-48 196.4 179 55.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 2.2e-48 196.4 100 85.0
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.7e-48 195.7 134 64.9
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 4.8e-48 195.3 178 57.3
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 6.3e-48 194.9 103 82.5
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.4e-47 193.7 161 59.6
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.9e-47 191.4 121 71.1
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.6e-46 189.5 100 85.0
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 3.4e-46 189.1 107 73.8
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.5e-46 188.7 108 72.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 7.7e-46 188.0 107 72.9
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.3e-45 187.2 126 69.8
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.2e-45 186.4 161 60.2
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.8e-45 185.7 185 53.0
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 6.5e-45 184.9 154 56.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.5e-45 184.5 118 66.1
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 8.5e-45 184.5 181 53.0
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.1e-44 184.1 129 64.3
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.1e-44 184.1 129 64.3
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.4e-44 183.7 124 68.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.5e-44 183.0 188 49.5
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 4.2e-44 182.2 118 69.5
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 7.2e-44 181.4 117 69.2
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.2e-43 180.6 130 63.1
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-43 180.6 119 65.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.6e-43 180.3 98 76.5
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.3e-42 176.4 96 81.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.3e-42 176.4 228 44.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.0e-42 176.0 107 74.8
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-41 173.3 107 74.8
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-41 172.9 121 62.8
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 9.7e-41 171.0 136 58.1
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.3e-40 170.6 127 59.8
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.4e-39 166.4 100 71.0
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.4e-39 166.4 117 58.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.1e-39 165.6 117 59.8
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.2e-38 164.1 117 59.8
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.2e-38 164.1 149 53.7
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.6e-38 162.9 127 57.5
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-37 159.5 98 69.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.9e-37 159.5 140 57.1
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.8e-37 159.1 117 56.4
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.8e-37 159.1 107 59.8
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.2e-36 154.8 149 51.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 9.4e-36 154.5 105 61.9
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.4e-36 154.5 107 56.1
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.2e-35 154.1 107 57.0
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-35 154.1 107 57.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.1e-35 153.3 128 59.4
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-35 151.8 107 56.1
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 6.1e-35 151.8 107 56.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 6.1e-35 151.8 107 56.1
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.1e-35 151.8 86 75.6
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.0e-34 151.0 104 71.2
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-34 149.4 128 51.6
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 3.0e-34 149.4 128 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 4.0e-34 149.1 117 53.0
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.0e-34 149.1 128 51.6
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 8.8e-34 147.9 109 56.0
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.1e-33 147.5 99 61.6
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.3e-33 146.0 124 60.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 4.8e-32 142.1 93 73.1
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.8e-32 142.1 93 73.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.1e-31 139.4 143 55.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 5.3e-31 138.7 126 46.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 3.5e-30 136.0 105 52.4
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 5.9e-30 135.2 64 92.2
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 5.9e-30 135.2 164 48.8
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 7.7e-30 134.8 157 48.4
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.1e-28 131.0 69 76.8
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.7e-27 126.3 65 86.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 6.1e-27 125.2 63 87.3
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.0e-26 124.4 163 46.0
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.4e-25 119.0 94 60.6
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 7.5e-25 118.2 134 43.3
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.2e-24 116.7 116 50.9
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 3.7e-24 115.9 147 44.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.3e-21 107.5 125 49.6
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.6e-19 99.4 105 40.0
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 4.4e-17 92.4 92 42.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.4e-15 86.7 85 54.1
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 3.5e-14 82.8 41 85.4
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 7.3e-12 75.1 60 55.0
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.6e-11 73.9 42 73.8
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.6e-11 73.9 41 70.7
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-10 70.5 109 42.2
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-10 69.7 109 42.2
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-09 67.4 111 37.8
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 4.6e-06 55.8 47 57.4


User provided reference genes

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