Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.7e-60 236.1 148 100.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-36 156.0 148 57.4
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.9e-36 155.6 148 58.1
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 3.8e-36 155.2 148 57.4
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 5.0e-36 154.8 148 55.4
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 6.6e-36 154.5 148 56.1
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.6e-36 154.1 148 56.8
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.6e-36 154.1 148 57.4
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.1e-35 153.7 148 57.4
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 56.8
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 56.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 56.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.9e-35 152.9 148 56.1
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.5e-35 152.5 143 67.1
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.5e-35 152.5 148 56.8
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 3.3e-35 152.1 148 56.1
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 3.3e-35 152.1 148 56.8
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 58.1
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 54.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 55.4
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 5.6e-35 151.4 148 70.3
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.2e-34 150.2 148 55.4
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.2e-34 150.2 148 56.1
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.6e-34 149.8 148 56.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 2.1e-34 149.4 148 55.4
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-34 149.1 148 54.1
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.8e-34 149.1 148 55.4
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 4.7e-34 148.3 147 55.1
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 54.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 54.1
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 60.8
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 8.0e-34 147.5 150 54.7
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.0e-33 147.1 150 56.0
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 54.7
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 53.4
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.0e-33 145.2 148 54.1
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 6.8e-33 144.4 140 56.4
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 6.8e-33 144.4 150 54.0
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-32 143.7 144 54.2
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.5e-32 143.3 144 54.2
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 53.4
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 52.0
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 2.6e-32 142.5 148 54.1
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 60.1
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.8e-32 141.4 143 53.1
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 9.8e-32 140.6 150 53.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.9e-31 139.0 145 51.7
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 6.4e-31 137.9 152 51.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.4e-31 137.9 148 50.7
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 8.3e-31 137.5 143 51.7
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 8.3e-31 137.5 148 54.7
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.9e-30 136.3 143 51.0
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.4e-30 136.0 148 58.8
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.1e-30 135.2 150 52.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 4.1e-30 135.2 152 53.3
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 5.4e-30 134.8 141 51.8
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 7.0e-30 134.4 151 53.0
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 9.2e-30 134.0 148 53.4
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.2e-29 133.7 151 53.0
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.5e-29 132.1 150 50.7
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.5e-29 132.1 152 52.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 4.6e-29 131.7 151 51.7
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 6.0e-29 131.3 150 50.7
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 7.8e-29 131.0 150 49.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.0e-28 130.6 148 48.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.3e-28 130.2 150 48.0
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.0e-28 129.0 140 50.0
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.9e-28 128.6 150 59.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.9e-28 128.6 150 59.3
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.1e-27 127.1 143 51.7
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 4.3e-27 125.2 148 48.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.6e-27 124.8 151 64.2
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.2e-26 123.6 144 48.6
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.6e-26 123.2 155 49.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.1e-26 122.9 138 50.7
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 4.7e-26 121.7 149 48.3
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 4.7e-26 121.7 132 50.8
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.1e-25 120.6 148 46.6
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 2.3e-25 119.4 148 45.9
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.1e-25 119.0 148 46.6
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 4.0e-25 118.6 148 46.6
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 8.9e-25 117.5 148 45.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.2e-24 117.1 148 44.6
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.2e-24 117.1 148 44.6
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.2e-24 117.1 148 44.6
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.2e-24 117.1 138 46.4
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 2.6e-24 115.9 148 45.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.6e-24 115.9 148 44.6
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 4.4e-24 115.2 148 43.9
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 4.4e-24 115.2 148 43.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.8e-24 114.8 120 53.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 7.5e-24 114.4 125 55.2
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 7.5e-24 114.4 119 52.9
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-23 113.2 119 52.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-23 113.2 119 52.9
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.7e-23 112.1 148 49.3
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.1e-22 110.5 151 43.0
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.2e-21 107.1 149 47.7
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-21 106.7 149 43.6
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.6e-21 106.7 119 50.4
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-21 105.5 121 47.1
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.5e-21 105.5 149 43.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.5e-21 105.5 149 43.6
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 4.6e-21 105.1 121 50.4
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-20 103.6 114 50.9
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-20 103.6 114 50.9
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.5e-19 99.4 140 38.6
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 7.3e-19 97.8 112 47.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.5e-19 97.4 129 45.0
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.2e-18 97.1 119 57.1
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.6e-18 95.5 118 44.9
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 6.2e-18 94.7 111 49.5
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 8.1e-18 94.4 114 44.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.3e-17 92.8 119 43.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.4e-15 84.7 149 40.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.7e-13 79.3 148 32.4
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 7.8e-13 77.8 64 59.4
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.7e-12 76.6 64 62.5
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-11 73.2 65 58.5
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 3.3e-11 72.4 149 35.6
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.2e-10 70.5 60 60.0
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-08 63.2 46 60.9
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 9.9e-08 60.8 54 61.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-07 60.1 46 58.7
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 3.8e-07 58.9 66 53.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 6.4e-07 58.2 130 30.8
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.2e-06 55.5 65 47.7


User provided reference genes

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