Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 8.4e-247 856.7 461 100.0
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.8e-125 453.0 465 57.2
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.1e-117 426.8 470 56.6
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.1e-116 424.5 472 55.9
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.0e-116 422.5 472 55.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 4.0e-108 396.0 472 53.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 9.0e-108 394.8 445 54.6
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.6e-107 393.3 465 55.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 7.1e-105 385.2 465 52.0
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.5e-104 382.9 457 53.4
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.0e-103 381.3 460 53.7
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 6.7e-103 378.6 471 51.2
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.1e-102 377.9 475 49.9
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.3e-101 374.4 446 51.8
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.6e-101 374.0 454 52.2
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 3.7e-101 372.9 461 50.5
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 5.3e-100 369.0 454 51.8
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 6.9e-100 368.6 460 50.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.0e-99 367.1 451 51.0
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.6e-99 366.7 459 51.4
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 7.6e-99 365.2 461 50.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.3e-98 364.4 469 51.2
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.7e-98 364.0 466 52.1
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.1e-97 361.3 465 51.6
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-97 360.9 463 50.1
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 7.1e-97 358.6 479 49.9
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 9.3e-97 358.2 455 49.9
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.7e-96 356.7 472 49.6
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 4.6e-96 355.9 466 50.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 5.7e-94 349.0 460 50.0
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 5.7e-94 349.0 459 47.7
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.3e-93 347.8 414 55.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.1e-93 347.1 471 49.9
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-92 344.4 458 48.7
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 6.9e-92 342.0 450 52.7
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 6.9e-92 342.0 412 53.6
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.2e-91 341.3 447 50.1
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.0e-91 340.5 464 48.3
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.4e-91 339.7 463 47.7
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.7e-90 337.4 427 51.8
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.2e-90 337.0 472 46.8
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.2e-90 337.0 445 51.0
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 3.8e-90 336.3 435 47.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 5.0e-90 335.9 464 48.7
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 6.5e-90 335.5 521 44.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.9e-89 334.0 459 47.7
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 2.5e-89 333.6 468 49.1
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 9.3e-89 331.6 449 47.7
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.6e-88 330.9 453 47.5
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.6e-88 330.9 462 47.0
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 2.1e-88 330.5 467 47.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.7e-88 330.1 455 47.9
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.3e-87 327.8 507 43.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 3.0e-87 326.6 421 50.1
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 5.1e-87 325.9 455 48.6
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.1e-86 324.7 427 50.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.5e-86 324.3 458 46.7
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 9.7e-86 321.6 449 47.2
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.6e-85 320.9 447 47.2
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 5.9e-83 312.4 463 46.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.3e-82 311.2 442 48.2
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.3e-82 311.2 442 48.2
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.3e-82 311.2 455 45.5
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 2.9e-82 310.1 471 47.6
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 5.0e-82 309.3 442 48.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.1e-81 308.1 406 48.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.9e-81 307.4 406 49.5
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 3.2e-81 306.6 430 47.2
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.2e-80 304.7 418 49.0
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.5e-78 297.7 285 60.7
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 9.7e-78 295.0 453 44.8
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 3.7e-77 293.1 475 43.4
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 8.2e-77 292.0 441 44.9
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.1e-76 291.6 497 42.9
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.2e-75 288.1 409 45.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.6e-75 287.0 401 47.1
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.4e-75 286.6 321 54.5
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.4e-75 286.6 440 45.5
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.7e-75 285.4 470 43.2
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.2e-74 283.9 432 45.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 6.5e-74 282.3 450 42.4
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.4e-73 281.2 457 44.0
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.9e-73 280.8 404 45.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 3.2e-73 280.0 454 42.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 9.4e-73 278.5 466 41.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 4.7e-72 276.2 446 42.8
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 5.2e-71 272.7 472 42.2
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.6e-70 270.4 440 43.6
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.3e-69 268.1 413 45.5
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-65 254.6 296 54.1
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.2e-64 251.5 440 42.7
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.1e-64 250.8 348 49.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 4.7e-64 249.6 434 43.8
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.2e-62 245.0 470 41.3
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.5e-62 244.6 343 44.9
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 2.0e-62 244.2 468 40.8
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.6e-62 243.8 401 44.1
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 9.7e-62 241.9 462 41.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.7e-61 240.0 363 45.2
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 6.3e-61 239.2 469 41.2
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 8.2e-61 238.8 410 42.9
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 4.1e-60 236.5 443 39.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.0e-59 234.2 378 43.7
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 3.5e-59 233.4 412 42.5
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.5e-54 218.0 412 41.3
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.0e-54 217.6 271 51.3
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 6.3e-53 212.6 429 39.9
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 4.1e-52 209.9 398 41.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.5e-51 206.5 431 37.1
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.6e-48 198.0 435 37.9
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.6e-48 198.0 435 37.9
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.0e-47 195.3 385 39.2
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 1.4e-47 194.9 338 41.1
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 7.5e-46 189.1 463 36.1
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 4.9e-45 186.4 208 54.3
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 2.4e-44 184.1 314 39.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 6.6e-42 176.0 336 40.8
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-40 171.8 242 49.6
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 8.0e-40 169.1 274 44.9
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.0e-39 168.7 235 48.5
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.7e-37 160.2 156 59.0
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 3.7e-37 160.2 186 54.8
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.4e-36 158.3 293 41.6
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 5.4e-36 156.4 163 58.3
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.9e-34 150.2 222 47.3
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-33 147.5 174 54.0
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-32 143.3 330 35.2
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 6.8e-31 139.4 135 53.3
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.4e-30 137.1 224 44.2
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.8e-30 136.3 239 42.3
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 7.5e-30 136.0 480 30.4
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 9.2e-28 129.0 140 53.6
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.8e-16 90.9 84 63.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.2e-11 75.5 92 48.9
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.5e-11 73.9 119 40.3
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.1e-10 70.1 103 40.8
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.5e-09 68.6 116 40.5
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 8.1e-08 62.8 92 38.0
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.2e-06 58.9 122 31.1
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 9.9e-06 55.8 130 30.8


User provided reference genes

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