Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 8.5e-241 836.6 437 100.0
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.7e-122 442.2 346 68.2
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.6e-117 426.4 292 74.3
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 8.5e-116 421.4 251 80.1
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.1e-115 421.0 256 77.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 4.2e-115 419.1 251 79.3
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.5e-115 418.7 451 53.7
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.2e-114 417.5 268 75.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.7e-114 416.4 298 72.1
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 6.1e-114 415.2 251 78.1
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.0e-113 414.5 251 77.7
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.0e-113 414.5 237 82.3
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.4e-113 414.1 345 64.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.8e-113 413.7 251 78.5
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.8e-113 413.7 251 78.5
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.8e-113 413.7 237 82.3
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 3.0e-113 412.9 349 60.7
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 3.9e-113 412.5 284 72.2
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 6.7e-113 411.8 289 72.0
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.1e-112 411.0 251 76.5
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.1e-112 411.0 236 79.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.0e-112 410.2 229 82.5
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.0e-112 410.2 318 65.4
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.6e-112 409.8 297 69.4
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.6e-112 409.8 459 53.4
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.6e-112 409.8 334 64.7
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.4e-112 409.1 397 57.7
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.7e-111 407.1 248 78.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.2e-111 406.8 350 60.9
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 3.7e-111 406.0 254 76.4
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 6.3e-111 405.2 344 64.0
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 8.2e-111 404.8 236 80.9
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.1e-110 404.4 345 61.4
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-110 404.1 452 52.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.4e-110 403.3 232 80.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.1e-110 402.9 236 80.1
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 4.1e-110 402.5 236 76.7
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 5.3e-110 402.1 240 78.3
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 9.1e-110 401.4 378 59.3
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 9.1e-110 401.4 284 71.1
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.6e-109 400.6 371 58.5
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.0e-109 400.2 266 72.9
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 2.0e-109 400.2 293 68.6
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.5e-109 399.4 294 68.7
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 3.5e-109 399.4 266 73.7
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.3e-108 397.5 266 73.3
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.7e-108 397.1 223 81.6
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 8.5e-108 394.8 236 75.4
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 1.1e-107 394.4 212 84.4
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.1e-107 394.4 249 73.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.5e-107 394.0 454 52.4
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.5e-107 394.0 212 84.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.9e-107 393.7 322 65.2
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.2e-107 392.9 280 70.4
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 4.2e-107 392.5 236 75.0
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.2e-107 392.5 223 81.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 9.4e-107 391.3 223 81.2
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.2e-106 391.0 240 75.4
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.1e-106 390.2 342 60.5
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.7e-106 389.8 227 79.7
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 3.6e-106 389.4 248 72.6
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 3.6e-106 389.4 227 79.3
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 3.6e-106 389.4 223 79.8
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 3.6e-106 389.4 234 77.8
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 6.1e-106 388.7 227 79.3
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.1e-106 388.7 244 77.0
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.0e-105 387.9 239 75.7
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.4e-105 387.5 263 71.9
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.8e-105 387.1 248 72.2
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.8e-105 387.1 318 64.8
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.3e-105 386.7 378 56.1
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.0e-105 386.0 270 70.7
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 4.0e-105 386.0 289 64.7
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 5.2e-105 385.6 264 68.9
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.2e-105 385.6 281 69.0
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 6.8e-105 385.2 460 51.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 6.8e-105 385.2 227 79.7
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 8.8e-105 384.8 219 81.3
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.2e-104 384.4 250 72.0
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.0e-104 383.6 239 76.6
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 5.7e-104 382.1 260 71.9
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 7.5e-104 381.7 382 53.9
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.3e-103 380.9 362 56.4
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 2.8e-103 379.8 235 74.5
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 3.7e-103 379.4 226 78.3
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 4.8e-103 379.0 372 57.0
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 4.8e-103 379.0 227 78.4
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 8.3e-103 378.3 348 59.8
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.1e-102 377.9 256 71.5
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.8e-102 377.1 228 77.2
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 7.0e-102 375.2 215 80.5
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 7.0e-102 375.2 236 73.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.6e-101 374.0 352 58.0
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.6e-101 374.0 377 57.0
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.0e-101 373.6 267 71.5
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.7e-101 373.2 223 77.6
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 5.9e-101 372.1 229 75.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 7.7e-101 371.7 230 74.8
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.9e-100 369.8 267 71.2
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 2.7e-98 363.2 202 81.7
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 8.0e-98 361.7 317 60.3
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.4e-97 360.9 210 81.4
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.2e-97 359.0 449 49.2
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.5e-96 357.5 291 61.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 5.7e-96 355.5 191 85.9
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 7.5e-96 355.1 339 56.6
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 9.8e-96 354.8 334 58.7
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 2.2e-95 353.6 270 66.7
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 8.3e-95 351.7 327 58.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 7.0e-94 348.6 377 52.8
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.3e-92 344.4 248 69.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 8.6e-92 341.7 291 59.8
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.4e-89 334.3 275 61.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.5e-88 330.9 316 56.3
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.1e-83 314.7 172 80.2
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 5.2e-81 305.8 197 73.1
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.2e-81 305.8 178 76.4
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.9e-81 305.1 173 80.9
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.9e-81 305.1 173 80.9
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.4e-80 303.1 211 69.7
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 5.8e-80 302.4 173 80.3
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 2.2e-79 300.4 173 80.9
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 8.3e-79 298.5 267 54.3
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.4e-78 297.7 267 53.9
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.1e-78 296.2 205 69.8
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.0e-76 290.0 173 76.3
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 9.5e-75 285.0 337 46.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 4.0e-73 279.6 226 60.6
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 1.5e-72 277.7 296 53.0
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.1e-70 271.6 260 55.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.2e-70 268.5 325 48.9
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.1e-69 267.3 267 55.4
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 6.2e-66 255.8 136 86.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.5e-64 251.1 234 51.7
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 9.9e-64 248.4 360 45.3
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-59 235.0 268 49.3
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 2.5e-59 233.8 237 49.8
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.4e-57 227.3 197 63.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.2e-57 226.1 194 64.4
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 6.8e-57 225.7 257 53.3
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.4e-56 223.4 205 62.4
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 9.3e-54 215.3 176 56.8
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.7e-52 211.1 157 63.7
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.1e-49 200.3 300 43.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.9e-46 191.0 234 43.6
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.1e-42 177.6 232 45.3
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.2e-40 171.8 129 62.8
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 2.0e-40 171.0 125 62.4
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 8.4e-39 165.6 203 44.3
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 4.8e-34 149.8 202 44.6
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.8e-15 87.0 55 69.1
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.5e-11 74.3 52 65.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.5e-08 63.5 175 26.9
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.4e-06 58.5 146 28.8


User provided reference genes

Program Settings