Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 1.2e-161 573.2 292 100.0
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 9.0e-37 158.3 322 37.3
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.2e-36 157.9 310 37.7
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 1.0e-32 144.8 326 35.6
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 1.1e-21 108.2 316 34.5
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 7.6e-20 102.1 202 37.6
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 1.9e-18 97.4 354 29.9
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 5.5e-18 95.9 207 36.7
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 1.2e-17 94.7 198 37.4
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 2.1e-17 94.0 217 37.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 3.5e-17 93.2 203 35.0
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 6.0e-17 92.4 219 35.2
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 1.0e-16 91.7 135 42.2
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 1.8e-16 90.9 322 29.5
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 5.1e-16 89.4 226 35.0
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 6.7e-16 89.0 105 52.4
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 1.1e-15 88.2 203 36.5
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 2.5e-15 87.0 185 37.8
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 7.4e-15 85.5 96 53.1
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 7.4e-15 85.5 148 43.2
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 7.4e-15 85.5 125 47.2
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 9.7e-15 85.1 105 51.4
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.6e-14 84.3 105 50.5
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 2.1e-14 84.0 239 36.8
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 2.8e-14 83.6 308 31.8
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 3.7e-14 83.2 256 35.9
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 6.3e-14 82.4 174 35.6
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 8.2e-14 82.0 199 32.7
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 1.4e-13 81.3 98 51.0
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 2.4e-13 80.5 196 37.8
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 2.4e-13 80.5 105 51.4
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 2.4e-13 80.5 221 35.7
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 3.1e-13 80.1 96 50.0
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 3.1e-13 80.1 98 46.9
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 4.1e-13 79.7 123 46.3
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 5.3e-13 79.3 195 37.9
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 5.3e-13 79.3 123 46.3
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 6.9e-13 79.0 98 45.9
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 9.0e-13 78.6 241 34.0
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 9.0e-13 78.6 123 46.3
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 2.0e-12 77.4 104 50.0
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 2.6e-12 77.0 118 45.8
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 2.6e-12 77.0 196 35.2
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 4.5e-12 76.3 204 31.4
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 7.6e-12 75.5 193 35.2
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.0e-11 75.1 127 41.7
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.0e-11 75.1 79 54.4
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 2.2e-11 73.9 146 39.7
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 5.0e-11 72.8 96 46.9
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 1.4e-10 71.2 296 29.7
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 1.9e-10 70.9 186 34.9
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 2.5e-10 70.5 210 31.0
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.2e-10 70.1 90 53.3
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.2e-10 70.1 90 53.3
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 3.2e-10 70.1 328 28.4
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 7.2e-10 68.9 322 28.3
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 7.2e-10 68.9 212 34.9
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 9.3e-10 68.6 180 35.0
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.2e-09 68.2 88 53.4
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.2e-09 68.2 88 53.4
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.6e-09 67.8 216 32.4
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 1.6e-09 67.8 217 30.9
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 2.1e-09 67.4 269 28.6
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 2.7e-09 67.0 174 35.6
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 3.6e-09 66.6 136 36.0
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 3.6e-09 66.6 92 47.8
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 6.1e-09 65.9 136 36.8
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 1.3e-08 64.7 98 42.9
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.8e-08 64.3 99 43.4
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 3.0e-08 63.5 257 29.6
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 3.9e-08 63.2 139 36.0
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 6.7e-08 62.4 151 36.4
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 8.7e-08 62.0 87 47.1
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 8.7e-08 62.0 99 42.4
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 2.5e-07 60.5 123 38.2
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 2.5e-07 60.5 249 28.5
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 3.3e-07 60.1 99 40.4
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 3.3e-07 60.1 84 50.0
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 5.7e-07 59.3 84 48.8
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 7.4e-07 58.9 194 31.4
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 7.4e-07 58.9 96 39.6
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.6e-06 57.8 242 31.0
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 4.8e-06 56.2 249 29.7
CiPaw.07G027900 Carya illinoinensis HOM05D003270 ORTHO05D003662 8.2e-06 55.5 259 25.1


User provided reference genes

Program Settings