Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 8.4e-151 537.0 264 100.0
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 1.0e-79 300.8 262 63.7
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 3.3e-78 295.8 262 62.2
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 7.3e-78 294.7 261 60.5
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 6.8e-76 288.1 255 61.2
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 8.9e-76 287.7 268 57.1
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 7.5e-75 284.6 268 60.8
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 9.8e-75 284.3 266 59.4
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 3.7e-74 282.3 238 60.9
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 1.8e-73 280.0 205 68.8
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 4.1e-73 278.9 267 59.2
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 4.1e-73 278.9 255 60.4
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 4.1e-73 278.9 203 65.5
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 3.5e-72 275.8 255 58.4
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 3.5e-72 275.8 255 59.6
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 3.5e-72 275.8 255 59.6
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 3.5e-72 275.8 237 60.8
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 4.6e-72 275.4 258 58.5
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 1.0e-71 274.2 257 57.6
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 1.3e-71 273.9 283 55.5
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 1.1e-70 270.8 201 67.2
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.5e-70 270.4 261 58.2
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 1.5e-70 270.4 236 59.3
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 1.9e-70 270.0 257 57.2
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 2.5e-70 269.6 257 56.8
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 2.5e-70 269.6 240 58.3
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 2.5e-70 269.6 276 55.1
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 4.3e-70 268.9 260 58.1
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 9.5e-70 267.7 227 59.5
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.6e-69 266.9 250 58.4
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.6e-69 266.9 262 56.5
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 3.6e-69 265.8 237 56.5
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.6e-69 265.8 254 57.1
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 4.7e-69 265.4 272 54.4
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 6.2e-69 265.0 273 53.1
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.0e-68 264.2 270 52.6
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.4e-68 263.8 255 56.1
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 2.3e-68 263.1 274 55.5
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 5.2e-68 261.9 259 53.3
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 5.2e-68 261.9 253 57.7
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 6.8e-68 261.5 258 55.0
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 8.9e-68 261.2 219 61.2
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 8.9e-68 261.2 249 57.0
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 2.0e-67 260.0 219 60.7
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.6e-67 259.6 219 61.2
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 3.4e-67 259.2 228 57.9
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 3.4e-67 259.2 267 55.8
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 3.4e-67 259.2 210 61.4
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 5.8e-67 258.5 254 55.5
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 5.8e-67 258.5 247 55.5
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 2.9e-66 256.1 206 59.7
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 3.7e-66 255.8 237 56.1
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 3.7e-66 255.8 299 49.8
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 3.7e-66 255.8 210 61.9
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 4.9e-66 255.4 172 71.5
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 8.3e-66 254.6 263 52.9
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 1.1e-65 254.2 210 61.4
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.4e-65 253.8 225 60.0
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 1.4e-65 253.8 213 61.5
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.9e-65 253.4 214 59.8
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 2.4e-65 253.1 225 60.0
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 2.4e-65 253.1 223 59.6
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 2.4e-65 253.1 261 52.9
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 3.2e-65 252.7 252 55.6
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 4.1e-65 252.3 225 60.0
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 5.4e-65 251.9 299 50.2
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 7.0e-65 251.5 195 66.2
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 7.0e-65 251.5 323 48.0
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 1.2e-64 250.8 241 56.4
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 2.0e-64 250.0 195 65.6
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 3.0e-63 246.1 233 56.7
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.5e-62 243.8 201 63.2
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 1.9e-62 243.4 245 55.9
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 1.9e-62 243.4 224 56.2
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 3.3e-62 242.7 202 58.9
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.6e-61 240.4 196 62.2
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 4.7e-61 238.8 196 61.7
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 4.7e-61 238.8 196 61.7
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 4.7e-61 238.8 198 60.6
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 6.2e-61 238.4 196 63.3
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 6.2e-61 238.4 196 63.3
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 2.3e-60 236.5 198 60.6
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.3e-60 236.5 197 62.9
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 3.1e-60 236.1 197 61.4
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 7.5e-59 231.5 218 54.1
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.9e-57 226.9 165 66.7
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 4.3e-54 215.7 251 47.4
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 3.6e-53 212.6 402 37.3
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 6.8e-52 208.4 195 54.4
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 2.6e-51 206.5 207 52.7
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 2.4e-49 199.9 275 46.2
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 9.2e-49 198.0 171 59.1
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 2.1e-48 196.8 249 47.4
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 7.8e-48 194.9 251 45.0
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 2.5e-46 189.9 160 56.9
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 2.1e-45 186.8 208 44.7
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 5.2e-44 182.2 162 58.6
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 6.8e-44 181.8 194 48.5
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 3.0e-39 166.4 264 43.9
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 8.4e-34 148.3 185 51.4
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 4.6e-32 142.5 92 70.7
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 6.6e-31 138.7 191 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 1.3e-29 134.4 128 54.7
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 2.1e-29 133.7 160 46.9
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 3.8e-26 122.9 184 43.5
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 5.1e-23 112.5 146 47.9
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.6e-21 107.5 191 37.7
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 4.8e-21 105.9 158 46.2
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.0e-19 100.5 198 36.4
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 4.5e-19 99.4 158 41.8
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.0e-15 88.2 95 51.6
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.4e-12 77.0 94 47.9
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 2.9e-10 70.1 96 39.6
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.1e-09 68.2 76 51.3
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 7.2e-09 65.5 67 50.7
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 2.1e-08 63.9 77 49.4
Oeu027210.1 Olea europaea HOM05D002956 ORTHO05D009000 6.1e-08 62.4 129 35.7


User provided reference genes

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