Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010880 Simmondsia chinensis HOM05D007713 ORTHO05D009748 1.3e-128 463.0 228 100.0
Rhsim13G0203800 Rhododendron simsii HOM05D007713 ORTHO05D009748 6.5e-83 311.2 248 64.9
Ah.06g194890 Amaranthus hybridus HOM05D007713 ORTHO05D009748 8.4e-83 310.8 237 64.1
EL10Ac4g10074 Beta vulgaris HOM05D007713 ORTHO05D009748 5.5e-82 308.1 237 66.2
AUR62000228 Chenopodium quinoa HOM05D007713 ORTHO05D009748 1.8e-80 303.1 236 64.8
CSS0029086 Camellia sinensis var. sinensis HOM05D007713 ORTHO05D009748 3.0e-80 302.4 242 63.6
AUR62006574 Chenopodium quinoa HOM05D007713 ORTHO05D009748 3.0e-80 302.4 237 65.4
Haze_23294 Corylus avellana HOM05D007713 ORTHO05D009748 2.2e-78 296.2 256 60.2
Haze_23299 Corylus avellana HOM05D007713 ORTHO05D009748 2.2e-78 296.2 256 60.2
TWI31G0070 Tripterygium wilfordii HOM05D007713 ORTHO05D009748 2.4e-77 292.7 242 61.6
Cfa009929 Carpinus fangiana HOM05D007713 ORTHO05D009748 4.1e-77 292.0 257 59.1
Manes.02G135500 Manihot esculenta HOM05D007713 ORTHO05D009748 6.9e-77 291.2 246 59.8
Hma1.2p1_0811F.1_g222080 Hydrangea macrophylla HOM05D007713 ORTHO05D009748 2.6e-76 289.3 243 60.9
Lj6g0023778 Lotus japonicus HOM05D007713 ORTHO05D009748 1.0e-75 287.3 241 59.8
TAR633G2062 Trochodendron aralioides HOM05D007713 ORTHO05D009748 1.3e-75 287.0 240 58.8
Actinidia06981 Actinidia chinensis HOM05D007713 ORTHO05D009748 2.2e-75 286.2 230 64.8
Dinv24613 Davidia involucrata HOM05D007713 ORTHO05D009748 2.9e-75 285.8 232 63.4
Lalb_Chr07g0188901 Lupinus albus HOM05D007713 ORTHO05D009748 3.8e-75 285.4 237 60.8
CiPaw.13G147100 Carya illinoinensis HOM05D007713 ORTHO05D009748 5.0e-75 285.0 250 60.0
Ca_26656_v3 Cicer arietinum L. HOM05D007713 ORTHO05D009748 8.5e-75 284.3 241 61.0
Potri.009G066500 Populus trichocarpa HOM05D007713 ORTHO05D009748 8.5e-75 284.3 249 58.6
Thecc.09G252200 Theobroma cacao HOM05D007713 ORTHO05D009748 3.2e-74 282.3 242 59.1
Gohir.D07G123200 Gossypium hirsutum HOM05D007713 ORTHO05D009748 5.5e-74 281.6 247 58.7
Gorai.001G132900 Gossypium raimondii HOM05D007713 ORTHO05D009748 7.2e-74 281.2 247 58.7
Potri.001G271900 Populus trichocarpa HOM05D007713 ORTHO05D009748 7.2e-74 281.2 249 58.6
QL01p016194 Quercus lobata HOM05D007713 ORTHO05D009748 2.7e-73 279.3 257 57.6
Lsat_1_v5_gn_2_31700 Lactuca sativa HOM05D007713 ORTHO05D009748 7.9e-73 277.7 241 58.1
SGA_v2.0_scaffold8G04513 Striga asiatica HOM05D007713 ORTHO05D009748 7.9e-73 277.7 246 58.5
Glyma.20G045100 Glycine max HOM05D007713 ORTHO05D009748 1.0e-72 277.3 245 58.8
CiPaw.12G120900 Carya illinoinensis HOM05D007713 ORTHO05D009748 1.8e-72 276.6 251 58.2
Lj2P811T4 Lonicera japonica HOM05D007713 ORTHO05D009748 1.8e-72 276.6 241 57.3
Cc01_g07320 Coffea canephora HOM05D007713 ORTHO05D009748 2.3e-72 276.2 242 58.3
Nitab4.5_0002161g0070 Nicotiana tabacum HOM05D007713 ORTHO05D009748 3.0e-72 275.8 243 57.2
BolC9t53535H Brassica oleracea HOM05D007713 ORTHO05D009748 5.1e-72 275.0 240 57.9
MBI19_g04340_MAGBIO Magnolia biondii HOM05D007713 ORTHO05D009748 5.1e-72 275.0 236 58.5
BcaB04g19704 Brassica carinata HOM05D007713 ORTHO05D009748 6.7e-72 274.6 240 57.9
A09p05580 Brassica napus HOM05D007713 ORTHO05D009748 6.7e-72 274.6 240 57.9
BraA09t36199Z Brassica rapa HOM05D007713 ORTHO05D009748 6.7e-72 274.6 240 57.9
BcaC04g23665 Brassica carinata HOM05D007713 ORTHO05D009748 8.8e-72 274.2 240 57.9
C09p06140 Brassica napus HOM05D007713 ORTHO05D009748 8.8e-72 274.2 240 57.9
Nitab4.5_0002567g0140 Nicotiana tabacum HOM05D007713 ORTHO05D009748 8.8e-72 274.2 243 56.8
TAR636G2738 Trochodendron aralioides HOM05D007713 ORTHO05D009748 1.1e-71 273.9 236 56.4
Oeu047953.1 Olea europaea HOM05D007713 ORTHO05D009748 1.5e-71 273.5 240 58.3
Sabra16G0167200 Salix brachista HOM05D007713 ORTHO05D009748 1.5e-71 273.5 248 56.9
Sp2g21080 Schrenkiella parvula HOM05D007713 ORTHO05D009748 2.0e-71 273.1 240 57.5
Duzib168G2333 Durio zibethinus HOM05D007713 ORTHO05D009748 2.5e-71 272.7 244 57.0
Gohir.A07G118900 Gossypium hirsutum HOM05D007713 ORTHO05D009748 2.5e-71 272.7 245 57.6
Aa31LG11G9740 Aethionema arabicum HOM05D007713 ORTHO05D009748 3.3e-71 272.3 240 57.1
Sopen11g029730 Solanum pennellii HOM05D007713 ORTHO05D009748 3.3e-71 272.3 246 56.1
PSO765G0028 Papaver somniferum HOM05D007713 ORTHO05D009748 4.3e-71 271.9 255 55.3
Thhalv10004305m.g Eutrema salsugineum HOM05D007713 ORTHO05D009748 1.3e-70 270.4 240 58.8
Peaxi162Scf00978g00032 Petunia axillaris HOM05D007713 ORTHO05D009748 1.7e-70 270.0 243 57.2
Phvul.006G018200 Phaseolus vulgaris HOM05D007713 ORTHO05D009748 1.7e-70 270.0 231 58.0
PSO349G0341 Papaver somniferum HOM05D007713 ORTHO05D009748 4.8e-70 268.5 255 54.9
AT5G26960 Arabidopsis thaliana HOM05D007713 ORTHO05D009748 8.2e-70 267.7 240 58.3
CARHR186580 Cardamine hirsuta HOM05D007713 ORTHO05D009748 8.2e-70 267.7 241 58.1
PGR119G2462 Punica granatum HOM05D007713 ORTHO05D009748 8.2e-70 267.7 245 58.0
AL6G38870 Arabidopsis lyrata HOM05D007713 ORTHO05D009748 1.1e-69 267.3 240 57.9
Cpa.g.sc36.103 Carica papaya HOM05D007713 ORTHO05D009748 1.8e-69 266.5 248 56.0
COL.COLO4_33248 Corchorus olitorius HOM05D007713 ORTHO05D009748 2.4e-69 266.2 242 56.2
HanXRQChr03g0080051 Helianthus annuus HOM05D007713 ORTHO05D009748 1.2e-68 263.8 240 55.4
TPR.G11930 Trifolium pratense HOM05D007713 ORTHO05D009748 1.5e-68 263.5 246 54.5
VMungo0540G1337 Vigna mungo HOM05D007713 ORTHO05D009748 2.0e-68 263.1 226 57.1
Aqoxy1G02561 Aquilegia oxysepala HOM05D007713 ORTHO05D009748 3.4e-68 262.3 251 55.0
Sed0009065 Sechium edule HOM05D007713 ORTHO05D009748 5.9e-68 261.5 255 52.9
Carub.0006s2459 Capsella rubella HOM05D007713 ORTHO05D009748 7.7e-68 261.2 240 57.1
CsaV3_1G041980 Cucumis sativus L. HOM05D007713 ORTHO05D009748 1.3e-67 260.4 247 52.6
ECA233G2058 Erigeron canadensis HOM05D007713 ORTHO05D009748 1.3e-67 260.4 246 57.3
MELO3C015613.2 Cucumis melo HOM05D007713 ORTHO05D009748 2.2e-67 259.6 247 52.6
ClCG03G014250 Citrullus lanatus HOM05D007713 ORTHO05D009748 5.0e-67 258.5 252 52.4
Medtr3g045210 Medicago truncatula HOM05D007713 ORTHO05D009748 2.5e-66 256.1 232 55.2
Atru.chr3.2844 Acer truncatum HOM05D007713 ORTHO05D009748 1.8e-64 250.0 238 55.5
PGSC0003DMG400027417 Solanum tuberosum HOM05D007713 ORTHO05D009748 2.2e-62 243.0 246 52.4
Ciclev10015393m.g Citrus clementina HOM05D007713 ORTHO05D009748 3.1e-61 239.2 228 53.5
Solyc11g072080.1 Solanum lycopersicum HOM05D007713 ORTHO05D009748 6.5e-59 231.5 186 60.2
GSVIVG01037395001 Vitis vinifera HOM05D007713 ORTHO05D009748 3.3e-55 219.2 145 73.1
Os11g0138700 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 9.1e-53 211.1 236 49.6
Os12g0135200 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 1.6e-52 210.3 236 49.2
Zm00001eb196340 Zea mays HOM05D007713 ORTHO05D009748 3.8e-51 205.7 238 47.9
THA.LOC104805019 Tarenaya hassleriana HOM05D007713 ORTHO05D009748 5.5e-50 201.8 247 47.0
Migut.D00708 Erythranthe guttata HOM05D007713 ORTHO05D009748 7.5e-47 191.4 213 49.8
Pp3c12_25210 Physcomitrium patens HOM05D007713 ORTHO05D009748 1.7e-46 190.3 246 41.1
SEGI_24675 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 2.8e-46 189.5 242 42.1
Mapoly0014s0086 Marchantia polymorpha HOM05D007713 ORTHO05D009748 5.9e-44 181.8 243 39.5
SMO116G0438 Selaginella moellendorffii HOM05D007713 ORTHO05D009748 1.0e-43 181.0 248 40.3
SEGI_20329 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 5.0e-43 178.7 243 39.1
Pp3c4_2880 Physcomitrium patens HOM05D007713 ORTHO05D009748 4.7e-41 172.2 246 39.4
Nn7g36950 Nelumbo nucifera HOM05D007713 ORTHO05D009748 4.1e-37 159.1 112 69.6
ATR0307G040 Amborella trichopoda HOM05D007713 ORTHO05D009748 6.6e-27 125.2 282 31.6
HPP92_018395 Vanilla planifolia HOM05D007713 ORTHO05D009748 1.4e-24 117.5 148 45.3
CAN.G280.7 Capsicum annuum HOM05D007713 ORTHO05D009748 2.4e-21 106.7 237 32.9
Mapoly0057s0100 Marchantia polymorpha HOM05D000667 ORTHO05D003095 1.7e-11 73.9 90 43.3
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 1.1e-10 71.2 102 41.2
Pp3c22_21630 Physcomitrium patens HOM05D000667 ORTHO05D003843 3.3e-10 69.7 102 36.3
AagrBONN_evm.TU.Sc2ySwM_344.5202 Anthoceros agrestis HOM05D000667 ORTHO05D003095 1.2e-09 67.8 72 47.2
Psat5g094920 Pisum sativum HOM05D000667 ORTHO05D003843 3.6e-09 66.2 133 31.6
Lj3A1066T76 Lonicera japonica HOM05D000667 ORTHO05D003843 6.2e-09 65.5 133 32.3
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 6.2e-09 65.5 107 41.1
Zm00001eb241600 Zea mays HOM05D000667 ORTHO05D003843 8.1e-09 65.1 133 33.8
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 1.1e-08 64.7 72 44.4
SMO358G0266 Selaginella moellendorffii HOM05D007183 ORTHO05D008829 1.4e-08 64.3 105 37.1
arahy.Tifrunner.gnm1.ann1.EK8XNT Arachis hypogaea HOM05D007183 ORTHO05D008829 1.8e-08 63.9 105 36.2
CAN.G168.28 Capsicum annuum HOM05D007183 ORTHO05D008829 1.8e-08 63.9 106 37.7
unitig_52.g17192 Utricularia gibba HOM05D000667 ORTHO05D003843 1.8e-08 63.9 133 33.8
MELO3C018752.2 Cucumis melo HOM05D007183 ORTHO05D008829 2.3e-08 63.5 102 37.3
Lj4g0026604 Lotus japonicus HOM05D000667 ORTHO05D003843 3.1e-08 63.2 133 30.1
Pp3c18_4130 Physcomitrium patens HOM05D000614 ORTHO05D003843 3.1e-08 63.2 102 36.3
ATR0796G263 Amborella trichopoda HOM05D007183 ORTHO05D003095 4.0e-08 62.8 67 41.8
arahy.Tifrunner.gnm1.ann1.B6W742 Arachis hypogaea HOM05D007183 ORTHO05D008829 4.0e-08 62.8 105 35.2
ClCG02G001190 Citrullus lanatus HOM05D007183 ORTHO05D008829 4.0e-08 62.8 107 37.4
Sabra10G0046400 Salix brachista HOM05D000667 ORTHO05D003843 4.0e-08 62.8 133 32.3
Gohir.D12G152400 Gossypium hirsutum HOM05D000667 ORTHO05D003843 5.2e-08 62.4 129 33.3
Sed0002450 Sechium edule HOM05D000667 ORTHO05D003843 5.2e-08 62.4 129 32.6
Sabra08G0134100 Salix brachista HOM05D000667 ORTHO05D003843 6.8e-08 62.0 133 32.3
TWI63G1715 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 8.9e-08 61.6 108 38.9
CsaV3_7G004260 Cucumis sativus L. HOM05D007183 ORTHO05D008829 1.2e-07 61.2 107 37.4
Glyma.15G069800 Glycine max HOM05D007183 ORTHO05D008829 1.2e-07 61.2 108 35.2
Gohir.A10G022800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.2e-07 61.2 112 34.8
RcHm_v2.0_Chr5g0007471 Rosa chinensis HOM05D007183 ORTHO05D008829 1.2e-07 61.2 107 35.5
Sed0021459 Sechium edule HOM05D007183 ORTHO05D008829 1.2e-07 61.2 107 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4698 Anthoceros agrestis HOM05D000667 ORTHO05D003095 1.5e-07 60.8 115 32.2
Thecc.06G194600 Theobroma cacao HOM05D007183 ORTHO05D008829 1.5e-07 60.8 110 36.4
Sabra13G0090200 Salix brachista HOM05D000667 ORTHO05D003843 2.6e-07 60.1 116 32.8
PGSC0003DMG400042494 Solanum tuberosum HOM05D007183 ORTHO05D008829 2.6e-07 60.1 108 36.1
BcaB02g06604 Brassica carinata HOM05D000667 ORTHO05D003095 4.4e-07 59.3 71 43.7
FvH4_3g27971 Fragaria vesca HOM05D007183 ORTHO05D008829 4.4e-07 59.3 107 34.6
Gohir.D10G023600 Gossypium hirsutum HOM05D007183 ORTHO05D008829 5.8e-07 58.9 112 34.8
Gorai.011G024700 Gossypium raimondii HOM05D007183 ORTHO05D008829 5.8e-07 58.9 112 33.9
ECA234G1429 Erigeron canadensis HOM05D007183 ORTHO05D000476 7.6e-07 58.5 105 32.4
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 7.6e-07 58.5 80 42.5
Solyc10g008530.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 7.6e-07 58.5 109 34.9
THA.LOC104812401 Tarenaya hassleriana HOM05D000667 ORTHO05D003095 7.6e-07 58.5 69 42.0
arahy.Tifrunner.gnm1.ann1.KI1H7A Arachis hypogaea HOM05D000667 ORTHO05D003843 9.9e-07 58.2 103 33.0
arahy.Tifrunner.gnm1.ann1.QM7S8Y Arachis hypogaea HOM05D000667 ORTHO05D003843 9.9e-07 58.2 103 33.0
arahy.Tifrunner.gnm1.ann1.WH7KQ6 Arachis hypogaea HOM05D000667 ORTHO05D003843 9.9e-07 58.2 103 33.0
BcaB01g01987 Brassica carinata HOM05D006360 ORTHO05D008045 9.9e-07 58.2 77 46.8
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 9.9e-07 58.2 69 37.7
Thecc.02G174600 Theobroma cacao HOM05D007183 ORTHO05D008829 9.9e-07 58.2 80 42.5
VMungo1383G2245 Vigna mungo HOM05D006360 ORTHO05D008045 9.9e-07 58.2 118 37.3
Gohir.A12G148500 Gossypium hirsutum HOM05D000667 ORTHO05D003843 1.3e-06 57.8 129 32.6
Nitab4.5_0000170g0260 Nicotiana tabacum HOM05D003852 ORTHO05D003095 1.3e-06 57.8 72 38.9
Nitab4.5_0000807g0200 Nicotiana tabacum HOM05D003852 ORTHO05D003095 1.3e-06 57.8 72 38.9
Actinidia20699 Actinidia chinensis HOM05D000667 ORTHO05D003843 1.7e-06 57.4 133 28.6
C09p02460 Brassica napus HOM05D002999 ORTHO05D003137 1.7e-06 57.4 77 46.8
BolC9t53176H Brassica oleracea HOM05D002999 ORTHO05D003137 1.7e-06 57.4 77 46.8
RcHm_v2.0_Chr4g0430611 Rosa chinensis HOM05D000667 ORTHO05D003843 1.7e-06 57.4 116 31.0
C08p17400 Brassica napus HOM05D001040 ORTHO05D002795 2.2e-06 57.0 69 40.6
BolC8t49366H Brassica oleracea HOM05D001040 ORTHO05D002795 2.2e-06 57.0 69 40.6
CBR_g37301 Chara braunii HOM05D000667 ORTHO05D003095 2.2e-06 57.0 85 35.3
Glyma.13G243900 Glycine max HOM05D007183 ORTHO05D008829 2.2e-06 57.0 108 33.3
Phvul.001G158600 Phaseolus vulgaris HOM05D006360 ORTHO05D008045 2.2e-06 57.0 108 38.0
QL03p053750 Quercus lobata HOM05D000667 ORTHO05D003843 2.2e-06 57.0 133 28.6
Sp1g14460 Schrenkiella parvula HOM05D000667 ORTHO05D003095 2.2e-06 57.0 69 42.0
Duzib106G1028 Durio zibethinus HOM05D000667 ORTHO05D003095 2.9e-06 56.6 69 39.1
PSO017G3537 Papaver somniferum HOM05D000667 ORTHO05D003843 2.9e-06 56.6 133 29.3
PSO478G3524 Papaver somniferum HOM05D000667 ORTHO05D003843 2.9e-06 56.6 133 29.3
ATR0626G150 Amborella trichopoda HOM05D000667 ORTHO05D003095 3.7e-06 56.2 103 34.0
BcaC05g25592 Brassica carinata HOM05D003852 ORTHO05D003095 3.7e-06 56.2 71 42.3
A09p02350 Brassica napus HOM05D006360 ORTHO05D008045 3.7e-06 56.2 77 45.5
BolC8t52002H Brassica oleracea HOM05D000667 ORTHO05D003095 3.7e-06 56.2 66 40.9
CAN.G275.1 Capsicum annuum HOM05D000667 ORTHO05D003095 3.7e-06 56.2 72 38.9
A08p31390 Brassica napus HOM05D001040 ORTHO05D002795 4.9e-06 55.8 69 40.6
C08p44570 Brassica napus HOM05D001040 ORTHO05D002795 4.9e-06 55.8 66 40.9
BraA08t35062Z Brassica rapa HOM05D001040 ORTHO05D002795 4.9e-06 55.8 69 40.6
AL1G28370 Arabidopsis lyrata HOM05D000667 ORTHO05D003095 6.4e-06 55.5 69 40.6
Duzib177G0493 Durio zibethinus HOM05D000667 ORTHO05D003095 6.4e-06 55.5 69 36.2
FvH4_4g21831 Fragaria vesca HOM05D000667 ORTHO05D003095 6.4e-06 55.5 66 39.4
FAN12G3400 Fragaria x ananassa HOM05D000667 ORTHO05D003095 6.4e-06 55.5 66 39.4
FAN17G1110 Fragaria x ananassa HOM05D000667 ORTHO05D003095 6.4e-06 55.5 66 39.4
Gohir.A13G165200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 6.4e-06 55.5 69 37.7
Mapoly0096s0062 Marchantia polymorpha HOM05D000667 ORTHO05D003095 6.4e-06 55.5 99 33.3
RcHm_v2.0_Chr4g0428071 Rosa chinensis HOM05D000667 ORTHO05D003095 6.4e-06 55.5 66 39.4
FAN07G0487 Fragaria x ananassa HOM05D000667 ORTHO05D003095 8.4e-06 55.1 66 39.4
Pp3c3_23580 Physcomitrium patens HOM05D006360 ORTHO05D008045 8.4e-06 55.1 149 30.9


User provided reference genes

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