Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 3.7e-203 711.4 397 100.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 6.1e-145 518.1 384 79.4
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 7.9e-145 517.7 387 79.1
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.8e-144 516.5 384 79.2
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.3e-142 510.4 384 77.1
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 4.5e-140 501.9 390 76.4
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.9e-140 501.5 390 77.2
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 7.7e-140 501.1 383 77.5
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.0e-139 500.7 385 76.6
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.3e-139 500.4 384 78.6
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.3e-139 500.4 387 77.5
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.8e-139 498.8 382 74.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 5.0e-139 498.4 384 78.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 6.5e-139 498.0 384 74.7
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 8.5e-139 497.7 390 74.9
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-138 496.9 382 75.1
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.4e-138 496.9 382 74.9
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 3.2e-138 495.7 383 76.0
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 5.5e-138 495.0 388 75.5
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.2e-137 493.8 384 77.6
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.6e-137 493.4 384 76.3
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.1e-137 493.0 382 77.2
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.1e-137 493.0 382 73.8
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.1e-137 493.0 382 74.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.6e-137 492.3 387 76.7
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 6.1e-137 491.5 384 75.5
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.1e-137 491.5 384 77.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 7.9e-137 491.1 384 76.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.3e-136 489.6 384 76.3
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 3.0e-136 489.2 386 74.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.0e-136 489.2 384 75.5
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.1e-135 487.3 384 75.8
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.0e-135 486.5 393 72.5
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.6e-135 486.1 382 76.2
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.6e-135 486.1 393 72.5
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 7.4e-135 484.6 382 76.2
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 9.7e-135 484.2 382 75.9
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.3e-134 483.8 382 75.9
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.2e-134 483.0 384 74.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.8e-134 482.6 384 74.0
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.7e-134 482.3 393 71.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.8e-134 481.9 393 72.3
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.8e-133 479.9 384 73.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.4e-133 479.6 382 74.3
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 3.1e-133 479.2 384 74.2
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 9.1e-133 477.6 393 71.8
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.5e-132 476.9 384 72.7
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 2.0e-132 476.5 384 74.2
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 2.6e-132 476.1 384 72.7
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 3.5e-132 475.7 384 73.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 4.5e-132 475.3 382 75.4
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.0e-131 474.2 426 62.2
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.0e-131 474.2 382 73.8
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.3e-131 473.8 386 74.6
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.2e-131 473.0 386 74.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 2.9e-131 472.6 387 74.2
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 3.8e-131 472.2 383 74.4
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 8.5e-131 471.1 384 72.7
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.4e-130 470.3 386 66.1
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.9e-130 469.9 383 74.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 2.5e-130 469.5 389 72.2
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.5e-130 469.5 381 72.7
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 4.2e-130 468.8 384 72.1
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.2e-129 467.2 382 65.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.2e-129 467.2 382 65.4
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 3.6e-129 465.7 384 72.7
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.7e-129 465.3 384 72.7
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 6.1e-129 464.9 384 73.2
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 6.1e-129 464.9 377 73.7
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.4e-128 463.8 384 72.4
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.8e-128 463.4 382 73.0
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.8e-128 463.4 384 72.4
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.9e-128 462.2 382 73.0
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 3.9e-128 462.2 384 71.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.1e-127 460.7 432 66.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 2.2e-126 456.4 382 72.8
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.8e-126 456.1 384 72.7
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 4.8e-126 455.3 416 67.5
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 7.0e-125 451.4 382 71.2
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.2e-124 450.7 382 68.6
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.2e-124 450.7 384 71.9
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 3.5e-124 449.1 384 71.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 3.8e-123 445.7 392 63.0
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 8.0e-121 438.0 388 68.3
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 6.8e-120 434.9 386 59.6
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.2e-118 429.9 384 68.5
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.8e-118 429.5 382 68.1
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.1e-117 427.6 385 66.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-117 427.2 384 67.7
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.8e-117 426.8 382 67.5
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 7.0e-117 424.9 382 67.5
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 7.0e-117 424.9 382 67.5
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.5e-116 422.2 384 67.2
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.5e-116 422.2 384 67.2
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.9e-116 421.8 384 67.7
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.9e-115 419.5 384 66.1
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.0e-115 418.7 384 67.4
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 2.1e-113 413.3 389 65.3
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.7e-113 412.9 393 58.0
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.5e-111 407.1 384 66.7
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.6e-111 406.4 310 66.5
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.2e-110 403.3 311 67.5
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.8e-110 402.9 330 65.2
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 4.8e-110 402.1 310 66.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 6.3e-110 401.7 386 65.0
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 9.5e-106 387.9 398 61.1
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.1e-105 386.7 312 64.4
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.4e-104 384.0 383 62.4
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.5e-103 380.6 382 62.6
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 7.5e-103 378.3 311 63.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.5e-100 369.4 307 65.1
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 9.2e-93 344.7 383 58.0
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 8.9e-88 328.2 325 60.0
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 8.9e-88 328.2 390 59.0
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.9e-80 301.6 391 50.1
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.7e-78 297.4 385 52.2
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.2e-73 281.2 297 54.9
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 3.4e-71 273.1 291 62.9
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 3.5e-68 263.1 390 46.4
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.3e-56 222.6 399 38.8
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.1e-40 171.8 135 65.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.0e-38 165.2 383 39.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.1e-36 157.5 107 72.0
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.5e-36 156.8 105 78.1
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 9.7e-34 148.7 210 45.7
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 4.8e-33 146.4 426 37.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.2e-31 141.7 164 52.4
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.7e-30 137.9 329 33.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.8e-30 136.7 219 42.5
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 2.5e-29 134.0 116 65.5
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 6.1e-28 129.4 91 72.5
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 3.9e-27 126.7 440 33.0
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.5e-23 114.8 89 69.7
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 3.6e-20 103.6 101 83.2
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 2.1e-12 77.8 60 65.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.0e-11 75.5 46 82.6
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.3e-11 74.3 85 49.4
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 5.7e-10 69.7 60 60.0
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 5.7e-10 69.7 70 51.4
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 2.2e-09 67.8 70 54.3
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.8e-09 67.4 106 43.4


User provided reference genes

Program Settings