Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 7.3e-57 223.8 122 100.0
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.3e-41 170.6 122 63.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.5e-38 162.9 116 64.7
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.6e-38 162.2 122 64.8
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 5.8e-38 161.0 116 64.7
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.6e-38 160.6 122 60.7
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.3e-37 159.8 127 62.2
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-37 159.8 116 63.8
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.1e-36 156.8 128 60.2
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.1e-36 156.8 125 60.8
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.4e-36 156.4 116 62.1
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.4e-36 156.4 125 60.8
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 3.2e-36 155.2 125 60.0
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 5.4e-36 154.5 125 60.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 5.4e-36 154.5 125 60.0
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 5.4e-36 154.5 125 60.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 7.1e-36 154.1 116 65.5
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 7.1e-36 154.1 127 59.1
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 7.1e-36 154.1 122 59.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 7.1e-36 154.1 134 56.7
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.6e-35 152.9 125 59.2
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.7e-35 152.1 118 62.7
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 2.7e-35 152.1 132 60.6
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.8e-35 150.6 123 56.9
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 7.8e-35 150.6 122 57.4
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.7e-34 149.4 125 56.0
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-34 149.1 123 56.1
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 3.0e-34 148.7 119 58.0
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 3.0e-34 148.7 122 59.0
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.9e-34 148.3 123 56.9
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 3.9e-34 148.3 124 55.6
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 5.1e-34 147.9 125 56.8
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 5.1e-34 147.9 126 57.1
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 5.1e-34 147.9 123 56.1
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 6.6e-34 147.5 126 57.1
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.1e-33 146.7 125 56.0
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.1e-33 146.7 124 56.5
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.5e-33 146.4 125 56.0
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.3e-33 145.2 123 57.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 5.6e-33 144.4 119 60.5
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 5.6e-33 144.4 116 57.8
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 7.3e-33 144.1 116 59.5
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 9.6e-33 143.7 128 54.7
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 9.6e-33 143.7 131 55.0
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 9.6e-33 143.7 128 60.9
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.6e-32 142.9 125 55.2
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 8.1e-32 140.6 116 59.5
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 8.1e-32 140.6 120 55.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.1e-31 140.2 120 57.5
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.1e-31 140.2 125 64.8
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.1e-31 140.2 123 56.1
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.1e-31 140.2 128 53.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.4e-31 139.8 128 55.5
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.4e-31 139.8 123 56.1
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 2.4e-31 139.0 120 59.2
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.1e-31 138.7 125 56.8
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.1e-31 138.7 126 54.0
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 3.1e-31 138.7 122 58.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.1e-31 138.7 121 55.4
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 5.2e-31 137.9 128 55.5
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-30 136.7 123 56.1
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.2e-30 136.7 122 57.4
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.5e-30 136.3 135 54.8
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.0e-30 136.0 122 56.6
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.0e-30 136.0 93 68.8
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 3.4e-30 135.2 88 68.2
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.8e-30 134.4 115 57.4
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 7.6e-30 134.0 139 50.4
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 7.6e-30 134.0 122 61.5
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 7.6e-30 134.0 117 57.3
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 9.9e-30 133.7 122 54.1
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.3e-29 133.3 126 52.4
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.7e-29 132.9 125 55.2
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.2e-29 132.5 122 55.7
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.9e-29 132.1 121 55.4
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.8e-29 131.7 123 54.5
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.8e-29 131.7 122 54.1
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 3.8e-29 131.7 124 56.5
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 6.4e-29 131.0 120 60.0
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 6.4e-29 131.0 116 53.4
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.1e-28 130.2 127 55.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.4e-28 129.8 126 51.6
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 3.2e-28 128.6 129 54.3
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 5.4e-28 127.9 117 54.7
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 7.1e-28 127.5 123 56.9
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 7.1e-28 127.5 122 53.3
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.2e-27 126.7 85 61.2
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.2e-27 126.7 128 51.6
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.6e-27 126.3 121 51.2
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 1.6e-27 126.3 116 50.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.7e-27 125.6 123 49.6
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 4.6e-27 124.8 127 50.4
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 7.8e-27 124.0 123 51.2
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 125 52.8
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.7e-26 122.9 118 55.1
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.3e-26 122.5 123 52.8
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 6.6e-26 120.9 117 54.7
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 8.7e-26 120.6 119 50.4
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 5.6e-25 117.9 120 56.7
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 7.3e-25 117.5 113 50.4
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 6.2e-24 114.4 120 55.0
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 8.1e-24 114.0 124 47.6
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.1e-23 113.6 88 56.8
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.4e-23 112.5 85 58.8
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.4e-23 112.5 122 47.5
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.9e-23 110.9 124 48.4
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.5e-22 109.8 65 72.3
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.5e-22 109.8 124 54.8
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.0e-22 109.4 122 46.7
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 2.0e-22 109.4 128 53.9
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.6e-22 109.0 130 43.8
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 9.9e-22 107.1 117 48.7
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.7e-21 106.3 115 47.8
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 3.8e-21 105.1 88 55.7
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 3.2e-20 102.1 110 48.2
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 4.2e-20 101.7 122 45.1
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 5.4e-20 101.3 116 46.6
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 7.1e-20 100.9 119 51.3
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 2.7e-19 99.0 127 40.9
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.5e-19 98.6 97 47.4
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.9e-19 97.4 110 45.5
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 6.2e-16 87.8 73 50.7
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.9e-15 84.3 65 53.8
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 2.0e-14 82.8 60 53.3
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.4e-14 82.0 86 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 4.5e-14 81.6 59 57.6
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 5.8e-14 81.3 93 43.0
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 9.9e-14 80.5 66 54.5
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.2e-13 79.3 62 59.7
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.8e-13 78.6 51 66.7
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.9e-13 78.2 88 38.6
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.9e-13 78.2 89 39.3
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.9e-12 76.3 64 54.7
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 1.2e-11 73.6 63 50.8
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 4.6e-11 71.6 65 50.8
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.8e-10 69.7 68 45.6
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.5e-09 65.9 62 45.2
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 9.6e-09 63.9 88 40.9
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-08 63.5 37 67.6
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 3.7e-08 62.0 75 40.0
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.5e-06 56.6 49 49.0
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.0e-06 56.2 128 34.4
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.4e-06 55.5 128 34.4


User provided reference genes

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