Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 1.4e-270 936.0 591 100.0
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 7.7e-136 488.4 598 63.2
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.3e-130 471.1 571 64.1
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 5.9e-128 462.2 603 60.5
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.7e-125 452.6 546 65.2
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 7.4e-123 445.3 583 60.4
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 8.0e-117 425.2 597 59.5
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 5.2e-116 422.5 617 57.9
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 8.8e-116 421.8 563 60.2
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.6e-115 420.2 603 58.5
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 2.2e-111 407.1 587 57.9
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.0e-108 398.3 586 58.5
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 3.4e-107 393.3 588 58.2
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 3.4e-107 393.3 587 57.2
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.7e-106 389.8 604 57.0
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.7e-106 389.8 604 57.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 3.7e-106 389.8 545 62.0
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 4.8e-106 389.4 585 56.4
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 4.8e-106 389.4 613 53.5
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 5.9e-104 382.5 424 67.7
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 7.7e-104 382.1 465 63.7
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.3e-103 381.3 447 61.7
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 1.3e-103 381.3 556 58.5
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.7e-103 380.9 604 53.8
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 2.9e-103 380.2 603 52.2
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.9e-102 377.5 401 52.6
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 1.9e-102 377.5 603 52.9
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 7.2e-102 375.6 558 56.5
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 2.1e-101 374.0 594 52.7
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 2.7e-101 373.6 586 56.8
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.7e-101 373.6 609 53.9
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 3.6e-101 373.2 532 57.7
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 6.1e-101 372.5 604 56.8
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.4e-100 371.3 604 50.7
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.8e-100 370.9 587 55.9
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.8e-100 370.9 472 62.9
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.5e-99 367.9 443 66.6
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.5e-99 367.9 598 57.7
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 2.6e-99 367.1 600 57.2
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 9.8e-99 365.2 580 55.7
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.7e-98 364.4 631 54.8
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 3.7e-98 363.2 588 55.8
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 3.7e-98 363.2 448 65.2
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 4.9e-98 362.8 446 66.8
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 4.9e-98 362.8 445 65.6
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 6.3e-98 362.5 451 64.3
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.1e-97 361.7 451 63.9
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.1e-97 361.7 613 52.7
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 3.1e-97 360.1 463 64.8
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.6e-96 357.8 456 64.7
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 2.5e-94 350.5 621 52.0
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 9.5e-94 348.6 536 54.7
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.2e-93 348.2 602 55.0
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.2e-93 348.2 618 38.5
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 3.6e-93 346.7 452 58.2
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 8.0e-93 345.5 284 60.6
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 4.4e-91 339.7 443 64.3
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.1e-89 335.1 628 51.8
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.8e-89 334.3 454 62.8
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 9.2e-89 332.0 401 46.6
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 9.2e-89 332.0 596 53.7
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 3.9e-87 326.6 599 53.8
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 5.6e-86 322.8 449 52.8
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 5.6e-86 322.8 458 61.6
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 2.8e-85 320.5 579 53.2
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 3.6e-85 320.1 587 52.5
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 1.0e-84 318.5 601 52.2
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 8.9e-84 315.5 597 52.6
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 3.4e-83 313.5 581 51.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 2.9e-82 310.5 604 50.7
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 3.7e-82 310.1 588 49.5
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 6.4e-82 309.3 474 59.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 6.4e-82 309.3 594 46.8
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 8.3e-82 308.9 422 41.5
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 8.3e-82 308.9 589 51.8
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 4.1e-81 306.6 365 46.8
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 4.1e-81 306.6 422 41.2
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 2.0e-80 304.3 531 52.9
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.6e-80 303.1 561 38.7
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 1.0e-79 302.0 578 52.1
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.9e-78 297.7 603 51.1
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 1.6e-77 294.7 549 53.7
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.8e-76 291.2 601 50.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 5.2e-76 289.7 552 53.3
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 6.8e-76 289.3 590 50.2
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 6.8e-76 289.3 499 53.7
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.9e-73 281.2 592 49.2
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 1.2e-72 278.5 474 55.5
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 1.0e-71 275.4 558 52.0
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 6.6e-71 272.7 601 48.9
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 8.1e-69 265.8 552 51.8
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 8.1e-69 265.8 589 49.4
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 8.1e-69 265.8 560 51.2
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 1.4e-68 265.0 553 51.9
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 3.1e-68 263.8 478 46.4
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 1.5e-67 261.5 557 51.0
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 1.7e-66 258.1 564 50.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 6.4e-66 256.1 557 50.8
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 1.2e-64 251.9 389 42.2
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 4.6e-64 250.0 472 35.0
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 2.5e-62 244.2 389 40.1
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 2.5e-62 244.2 486 53.9
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 4.3e-62 243.4 562 49.6
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 4.7e-61 240.0 390 38.7
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 4.7e-61 240.0 390 38.7
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.7e-58 231.5 428 35.0
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.6e-56 224.9 253 47.4
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 1.9e-49 201.4 568 43.0
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 4.5e-43 180.3 437 43.9
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.2e-41 173.7 348 35.6
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.1e-40 171.4 278 41.0
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.9e-39 167.2 359 34.3
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 3.2e-33 147.5 176 46.0
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 9.3e-33 146.0 500 40.8
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 7.4e-30 136.3 302 33.4
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.6e-29 135.2 288 31.6
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.6e-29 135.2 288 31.6
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 2.1e-29 134.8 280 31.8
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.4e-28 132.1 293 31.7
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.8e-28 131.7 275 33.1
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 6.1e-24 116.7 264 32.2
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.2e-21 108.2 65 80.0
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 2.9e-18 97.8 63 76.2
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.2e-16 92.4 204 32.8
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 3.6e-16 90.9 126 43.7
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 3.6e-16 90.9 132 36.4
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 1.5e-14 85.5 59 71.2
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 6.3e-13 80.1 64 67.2
Gorai.013G189200 Gossypium raimondii HOM05D007661 ORTHO05D009671 1.7e-10 72.0 174 27.0
Gorai.013G189900 Gossypium raimondii HOM05D007661 ORTHO05D009671 1.7e-10 72.0 174 27.0
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 1.7e-10 72.0 66 50.0
Gohir.D13G171600 Gossypium hirsutum HOM05D007661 ORTHO05D009671 5.0e-10 70.5 175 26.3
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 1.1e-09 69.3 282 23.8
Gohir.D13G171200 Gossypium hirsutum HOM05D007661 ORTHO05D009671 2.5e-09 68.2 174 25.9
DCAR_027464 Daucus carota HOM05D005622 ORTHO05D002854 4.2e-09 67.4 286 23.1
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 5.5e-09 67.0 193 26.4
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 1.2e-08 65.9 74 44.6
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 4.7e-08 63.9 142 31.7
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 7.9e-08 63.2 182 30.2
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 7.9e-08 63.2 197 25.4
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.0e-07 62.8 280 22.9
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 1.4e-07 62.4 137 32.1
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.4e-07 62.4 280 23.2
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.3e-07 61.6 281 23.5
COL.COLO4_38175 Corchorus olitorius HOM05D007661 ORTHO05D009671 3.0e-07 61.2 166 24.7
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 3.9e-07 60.8 234 23.5
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 5.2e-07 60.5 134 29.9
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 5.2e-07 60.5 179 25.1
SalBow6G6645 Salvia bowleyana HOM05D000424 ORTHO05D000355 6.7e-07 60.1 180 26.7
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 8.8e-07 59.7 142 23.2
Gorai.009G455800 Gossypium raimondii HOM05D005622 ORTHO05D002854 8.8e-07 59.7 357 21.0
Aa31sc52G230 Aethionema arabicum HOM05D006596 ORTHO05D008497 1.1e-06 59.3 201 24.9
AT1G77360 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 1.1e-06 59.3 179 27.9
Gohir.A05G164100 Gossypium hirsutum HOM05D007661 ORTHO05D009671 1.1e-06 59.3 154 26.0
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 1.1e-06 59.3 43 69.8
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 1.5e-06 58.9 242 23.1
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.0e-06 58.5 252 24.6
Aa31LG4G7380 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.6e-06 58.2 179 27.4
Migut.E00052 Erythranthe guttata HOM05D005622 ORTHO05D002854 2.6e-06 58.2 272 24.6
Gohir.D05G389201 Gossypium hirsutum HOM05D005622 ORTHO05D002854 3.3e-06 57.8 342 21.1
Zm00001eb259410 Zea mays HOM05D027950 ORTHO05D011021 3.3e-06 57.8 101 30.7
Thhalv10018469m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 4.4e-06 57.4 178 26.4
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 4.4e-06 57.4 193 24.9
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 4.4e-06 57.4 193 24.9
Rhsim08G0089900 Rhododendron simsii HOM05D000424 ORTHO05D000355 4.4e-06 57.4 204 23.0
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 4.4e-06 57.4 163 28.2
Gohir.D10G255600 Gossypium hirsutum HOM05D005622 ORTHO05D002854 5.7e-06 57.0 342 21.1
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 5.7e-06 57.0 222 23.9
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 7.4e-06 56.6 170 25.9
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 7.4e-06 56.6 192 26.0
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 7.4e-06 56.6 192 26.0
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 7.4e-06 56.6 192 26.0
Sc03g0010190 Simmondsia chinensis HOM05D000424 ORTHO05D000355 7.4e-06 56.6 152 27.6
Carub.0002s2424 Capsella rubella HOM05D000424 ORTHO05D000355 9.7e-06 56.2 171 26.3
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 9.7e-06 56.2 182 23.6
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 9.7e-06 56.2 335 20.3


User provided reference genes

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