Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 2.1e-166 589.0 299 100.0
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 6.2e-110 401.4 304 68.8
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.4e-109 399.4 321 66.4
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 2.4e-106 389.4 304 66.4
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 1.2e-105 387.1 300 67.3
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 3.5e-105 385.6 293 68.6
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 4.6e-105 385.2 308 66.6
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 4.6e-105 385.2 298 67.8
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.3e-104 382.9 298 67.4
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 3.9e-104 382.1 305 67.5
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 1.9e-103 379.8 305 65.6
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 3.3e-103 379.0 294 67.7
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 5.6e-103 378.3 293 66.6
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 5.6e-103 378.3 302 65.2
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 7.4e-103 377.9 301 66.8
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 9.6e-103 377.5 299 65.9
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 1.6e-102 376.7 289 67.5
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.6e-102 376.7 284 68.0
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 6.2e-102 374.8 293 66.6
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.4e-101 373.6 304 65.1
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.8e-101 373.2 273 67.8
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 2.4e-101 372.9 299 66.6
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 3.1e-101 372.5 298 64.8
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 3.1e-101 372.5 296 65.9
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 4.0e-101 372.1 283 66.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.3e-101 371.7 281 65.8
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 6.9e-101 371.3 283 67.5
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 6.9e-101 371.3 303 64.0
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 9.0e-101 370.9 297 65.3
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 2.6e-100 369.4 297 65.0
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 3.4e-100 369.0 297 64.3
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.5e-100 368.6 297 65.7
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 7.6e-100 367.9 297 63.6
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.3e-99 367.1 287 64.1
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 1.3e-99 367.1 291 67.4
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 1.7e-99 366.7 283 65.0
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.7e-99 366.7 292 66.8
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.7e-99 366.7 301 66.1
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 2.2e-99 366.3 296 64.2
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 2.2e-99 366.3 297 64.6
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 2.9e-99 365.9 304 63.2
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 2.9e-99 365.9 297 64.3
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 2.9e-99 365.9 296 64.2
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 6.5e-99 364.8 295 63.4
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 6.5e-99 364.8 298 64.4
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 6.5e-99 364.8 316 63.0
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 8.4e-99 364.4 295 63.1
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 8.4e-99 364.4 296 65.2
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 8.4e-99 364.4 294 65.3
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.4e-98 363.6 299 62.9
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 1.9e-98 363.2 307 64.5
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.9e-98 363.2 291 66.7
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.5e-98 362.8 279 65.2
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 7.1e-98 361.3 297 63.3
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 7.1e-98 361.3 302 62.9
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 9.3e-98 360.9 289 63.7
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.2e-97 360.5 338 58.3
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 1.2e-97 360.5 303 62.4
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 1.6e-97 360.1 301 63.5
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 2.1e-97 359.8 298 65.1
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 2.1e-97 359.8 294 62.9
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 1.0e-96 357.5 313 63.6
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.0e-96 357.5 287 62.4
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.0e-96 357.5 291 65.3
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.8e-96 356.7 295 63.7
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 3.0e-96 355.9 274 65.7
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 5.1e-96 355.1 277 64.3
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 8.7e-96 354.4 336 58.0
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 1.1e-95 354.0 289 65.1
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 1.1e-95 354.0 302 61.9
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 4.3e-95 352.1 295 64.4
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 5.7e-95 351.7 299 62.9
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.3e-94 350.5 284 65.8
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 2.2e-94 349.7 293 62.8
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 2.8e-94 349.4 313 60.7
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 1.8e-93 346.7 293 64.2
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 1.8e-93 346.7 301 61.8
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 6.9e-93 344.7 279 62.7
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 9.0e-93 344.4 276 63.0
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 6.5e-91 338.2 316 60.1
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 6.5e-91 338.2 297 60.6
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 9.4e-90 334.3 295 59.3
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.6e-89 333.6 281 63.7
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.1e-89 333.2 316 59.2
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 1.8e-88 330.1 271 62.4
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.2e-84 317.4 324 55.9
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 3.4e-84 315.8 299 57.9
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.8e-83 312.4 298 57.4
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 7.2e-82 308.1 299 56.9
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 1.6e-81 307.0 298 58.7
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 3.0e-80 302.8 300 58.0
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 3.9e-80 302.4 296 56.8
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.3e-78 297.4 279 58.8
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.3e-75 287.3 240 61.7
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 1.3e-75 287.3 302 55.0
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 8.5e-75 284.6 290 54.5
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 4.2e-74 282.3 233 63.9
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 1.8e-69 266.9 294 51.4
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.9e-68 261.9 194 66.5
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.8e-64 250.4 195 64.1
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 6.3e-62 241.9 184 65.8
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 2.3e-56 223.4 301 44.2
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 2.3e-56 223.4 186 64.0
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.2e-55 221.1 305 47.5
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 7.0e-53 211.8 141 70.2
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 5.0e-51 205.7 182 61.0
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 4.2e-50 202.6 168 60.7
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 6.8e-48 195.3 201 52.7
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 8.3e-46 188.3 217 48.8
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 1.8e-45 187.2 287 40.4
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 7.8e-44 181.8 159 59.7
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 5.0e-43 179.1 301 41.9
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 8.6e-43 178.3 156 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.0e-40 171.4 268 38.1
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 5.2e-40 169.1 124 69.4
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.2e-39 167.9 294 35.0
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.4e-39 166.4 150 57.3
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.0e-31 140.6 151 51.7
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 5.8e-31 139.0 136 59.6
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 3.7e-30 136.3 95 64.2
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 3.7e-30 136.3 104 72.1
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 4.1e-29 132.9 104 72.1
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.2e-22 110.5 116 55.2
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.1e-21 108.2 104 60.6
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.3e-19 101.3 77 67.5
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 1.3e-19 101.3 101 56.4
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 5.6e-18 95.9 288 32.6
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 2.8e-17 93.6 278 27.7
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 4.7e-17 92.8 108 48.1
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 8.1e-17 92.0 81 69.1
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 5.2e-16 89.4 298 29.2
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 4.6e-12 76.3 87 51.7
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 5.8e-07 59.3 155 26.5


User provided reference genes

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