Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 0.0e+00 1390.9 741 100.0
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 4.9e-172 609.0 769 51.0
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.2e-165 587.8 782 49.2
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 2.5e-144 516.9 662 50.2
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 4.0e-134 483.0 791 42.9
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 4.5e-133 479.6 759 42.8
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 7.1e-123 445.7 718 42.8
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 2.7e-122 443.7 731 40.6
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 8.7e-121 438.7 710 42.3
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 2.5e-120 437.2 738 42.8
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 5.3e-118 429.5 521 49.1
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 1.2e-117 428.3 747 39.9
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 1.5e-117 427.9 726 40.8
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.9e-117 426.0 744 41.1
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.7e-116 424.5 731 41.2
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 6.5e-116 422.5 742 41.9
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 8.5e-116 422.2 747 41.0
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.4e-115 421.4 764 40.8
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 1.9e-115 421.0 744 41.1
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 7.2e-115 419.1 728 41.8
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 9.3e-115 418.7 742 41.8
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.6e-114 417.9 754 39.5
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 2.7e-114 417.2 737 39.9
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 7.9e-114 415.6 776 39.3
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.0e-113 415.2 732 40.2
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.0e-113 413.7 741 40.5
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 4.3e-112 409.8 809 37.1
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 8.2e-111 405.6 766 40.1
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 2.4e-110 404.1 666 42.0
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 7.7e-109 399.1 725 38.8
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 2.1e-106 391.0 732 39.6
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 6.1e-106 389.4 719 39.9
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 4.4e-104 383.3 741 38.2
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 7.7e-101 372.5 619 41.7
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 1.7e-100 371.3 828 37.6
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.1e-99 368.6 703 36.8
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.0e-97 362.1 721 37.4
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 1.0e-97 362.1 731 38.6
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 1.4e-97 361.7 830 37.8
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.8e-97 361.3 705 37.6
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 2.0e-96 357.8 715 38.6
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 2.8e-95 354.0 640 39.1
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 2.8e-95 354.0 721 39.0
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.1e-94 350.5 744 37.8
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 4.1e-94 350.1 610 39.0
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 9.1e-94 349.0 777 36.6
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 3.5e-93 347.1 594 40.2
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 3.8e-92 343.6 696 37.8
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.9e-91 341.3 701 37.2
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.6e-90 338.2 701 36.1
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 2.1e-90 337.8 442 46.6
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 4.7e-90 336.7 701 40.7
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 6.1e-90 336.3 606 38.8
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.4e-89 335.1 699 37.3
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 3.3e-88 330.5 649 38.7
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 1.7e-87 328.2 506 42.3
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 4.1e-86 323.6 404 46.3
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.0e-84 318.9 696 35.5
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 2.9e-84 317.4 727 36.0
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 1.9e-83 314.7 461 45.1
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 4.2e-83 313.5 578 36.2
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.2e-82 312.0 586 37.7
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.6e-82 310.5 694 34.1
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 6.1e-82 309.7 699 36.5
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.4e-81 308.5 561 40.1
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 3.0e-81 307.4 520 43.1
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.2e-80 305.4 759 36.9
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.3e-79 302.0 574 38.7
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 3.7e-79 300.4 648 35.2
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.4e-78 298.5 728 36.1
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 4.1e-78 297.0 724 36.2
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 9.1e-78 295.8 725 34.3
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 9.1e-78 295.8 686 35.1
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.6e-77 295.0 684 35.4
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.5e-77 293.9 720 35.3
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.5e-77 293.9 463 44.9
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 1.0e-76 292.4 713 34.2
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.8e-74 284.3 715 34.4
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.8e-74 284.3 550 40.2
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 3.6e-74 283.9 715 34.1
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 3.6e-74 283.9 717 34.2
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.9e-71 273.5 729 32.2
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.9e-71 273.5 729 32.2
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.3e-68 265.4 521 42.8
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 2.2e-63 248.1 863 29.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 2.4e-62 244.6 712 33.4
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 5.4e-62 243.4 715 33.1
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 1.6e-53 215.3 307 45.0
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.0e-53 214.9 340 40.9
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.0e-52 211.1 549 37.7
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 5.0e-52 210.3 400 37.8
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 7.5e-48 196.4 605 31.1
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.7e-47 195.3 323 41.5
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 3.7e-47 194.1 243 46.1
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 9.2e-46 189.5 214 43.5
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.2e-45 189.1 537 30.5
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 1.3e-44 185.7 444 36.9
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 6.6e-44 183.3 386 43.8
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 8.6e-44 183.0 555 29.0
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 1.5e-43 182.2 530 29.6
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 4.9e-39 167.2 326 37.7
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 6.4e-39 166.8 336 42.0
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 2.1e-37 161.8 372 32.0
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 6.9e-33 146.7 301 39.5
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.3e-31 142.5 359 35.7
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 4.2e-30 137.5 170 52.4
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 7.1e-30 136.7 358 35.8
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 6.6e-28 130.2 363 33.6
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 2.0e-24 118.6 151 43.7
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 7.1e-22 110.2 178 43.8
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 7.1e-22 110.2 128 55.5
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 3.5e-21 107.8 291 28.5
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.5e-19 102.4 102 57.8
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 1.1e-17 96.3 111 54.1
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.1e-14 83.6 216 33.8
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 1.8e-12 79.0 124 37.9
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 5.6e-11 73.9 318 27.0
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 2.0e-08 65.5 48 72.9
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.7e-07 62.4 45 73.3
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 2.9e-07 61.6 107 36.4


User provided reference genes

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