Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-102 376.3 184 100.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.3e-38 162.9 111 74.8
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.1e-36 156.4 111 71.2
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 4.8e-36 155.2 111 70.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 6.2e-36 154.8 116 69.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.2e-36 154.5 99 79.8
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 3.1e-35 152.5 112 73.2
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 5.3e-35 151.8 110 71.8
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 6.9e-35 151.4 112 73.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.2e-34 150.6 113 72.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.0e-34 149.8 112 71.4
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 4.5e-34 148.7 115 67.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.0e-33 147.5 109 69.7
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.0e-33 147.5 113 69.0
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-33 147.5 114 69.3
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.2e-33 146.4 88 83.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 6.5e-33 144.8 111 66.7
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.1e-32 144.1 102 72.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-32 143.7 114 68.4
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-32 143.7 102 74.5
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.9e-32 143.3 88 78.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.9e-32 143.3 88 79.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.5e-32 142.9 88 81.8
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.5e-32 142.9 87 79.3
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.5e-32 142.9 87 79.3
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.5e-32 142.9 87 79.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.2e-32 142.5 113 67.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 4.2e-32 142.1 92 77.2
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 4.2e-32 142.1 85 80.0
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 4.2e-32 142.1 85 80.0
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 4.2e-32 142.1 118 64.4
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 4.2e-32 142.1 96 71.9
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.5e-32 141.7 110 69.1
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 5.5e-32 141.7 91 76.9
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 5.5e-32 141.7 86 81.4
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 7.2e-32 141.4 89 77.5
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 7.2e-32 141.4 88 77.3
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 9.3e-32 141.0 96 77.1
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.3e-32 141.0 99 69.7
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.2e-31 140.6 110 65.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 1.2e-31 140.6 88 77.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.2e-31 140.6 114 66.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.6e-31 140.2 90 75.6
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.6e-31 140.2 86 80.2
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.6e-31 140.2 99 72.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.6e-31 140.2 99 72.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.6e-31 140.2 89 75.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.1e-31 139.8 88 76.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.1e-31 139.8 110 65.5
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.1e-31 139.8 108 66.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.1e-31 139.8 86 79.1
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.7e-31 139.4 99 71.7
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.7e-31 139.4 91 74.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.5e-31 139.0 83 79.5
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.5e-31 139.0 89 74.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 3.5e-31 139.0 112 61.6
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.5e-31 139.0 92 70.7
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.5e-31 139.0 110 62.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.6e-31 138.7 85 80.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 4.6e-31 138.7 86 79.1
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 6.1e-31 138.3 88 73.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.9e-31 137.9 99 70.7
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 7.9e-31 137.9 94 73.4
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 7.9e-31 137.9 91 72.5
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 7.9e-31 137.9 112 66.1
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.0e-30 137.5 88 78.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.0e-30 137.5 113 66.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.3e-30 137.1 88 75.0
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.3e-30 137.1 108 67.6
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-30 136.7 87 73.6
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.8e-30 136.7 87 73.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.8e-30 136.7 87 73.6
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.8e-30 136.7 86 80.2
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.8e-30 136.7 88 76.1
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.8e-30 136.7 113 62.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.3e-30 136.3 109 63.3
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.3e-30 136.3 88 71.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.3e-30 136.3 97 70.1
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.3e-30 136.3 110 61.8
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.0e-30 136.0 110 60.9
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.0e-30 136.0 109 63.3
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.0e-30 136.0 111 66.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.9e-30 135.6 109 63.3
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.9e-30 135.6 87 72.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.9e-30 135.6 109 63.3
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.9e-30 135.6 103 66.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.9e-30 135.6 107 65.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 5.1e-30 135.2 109 63.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 5.1e-30 135.2 97 71.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.1e-30 135.2 90 72.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 6.7e-30 134.8 111 62.2
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 8.7e-30 134.4 86 74.4
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 8.7e-30 134.4 109 64.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.5e-29 133.7 87 73.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.5e-29 133.7 81 82.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.9e-29 133.3 93 65.6
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.9e-29 133.3 110 60.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.9e-29 133.3 109 61.5
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.3e-29 132.1 87 71.3
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.3e-29 132.1 84 73.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.3e-29 132.1 80 81.2
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 4.3e-29 132.1 96 72.9
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.7e-29 131.7 84 73.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 7.4e-29 131.3 153 53.6
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.3e-28 130.6 97 70.1
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.6e-28 130.2 97 69.1
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.6e-28 130.2 113 58.4
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.2e-28 129.8 83 72.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 4.8e-28 128.6 101 65.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.1e-27 127.5 75 80.0
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.4e-27 127.1 112 62.5
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-27 126.7 88 71.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-27 126.3 91 69.2
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.4e-27 126.3 91 69.2
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 3.1e-27 125.9 91 69.2
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.1e-27 125.9 113 57.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 5.3e-27 125.2 89 69.7
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.3e-27 125.2 88 70.5
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.3e-27 125.2 127 57.5
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 6.9e-27 124.8 91 67.0
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.9e-26 121.7 143 49.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.3e-25 120.6 91 67.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-25 120.6 90 71.1
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.1e-24 117.5 93 64.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.9e-24 116.7 116 56.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.5e-24 116.3 87 71.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.9e-23 111.3 71 74.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.0e-22 110.9 103 60.2
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.3e-22 109.8 86 64.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 3.0e-22 109.4 86 62.8
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.1e-21 107.5 93 59.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.7e-20 102.4 90 60.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.2e-20 101.3 91 57.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.2e-20 101.3 97 58.8
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.8e-19 100.1 82 65.9
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 4.1e-19 99.0 65 78.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.0e-18 96.7 63 71.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.0e-17 94.4 123 46.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.2e-17 93.2 65 72.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.9e-17 92.8 123 45.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 6.5e-17 91.7 57 80.7
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.1e-16 90.9 90 51.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.4e-16 90.5 51 84.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-16 88.2 73 61.6
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 7.2e-16 88.2 65 67.7
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 9.4e-16 87.8 76 57.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 9.4e-16 87.8 76 57.9
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.6e-15 87.0 69 58.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.1e-15 85.1 60 73.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 7.9e-15 84.7 79 50.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.3e-14 83.2 54 77.8
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 2.2e-12 76.6 65 58.5
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 3.7e-12 75.9 57 66.7
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 4.8e-12 75.5 67 58.2
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.5e-10 69.3 46 76.1
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.7e-09 67.0 77 50.6
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.7e-09 67.0 89 41.6
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 6.5e-09 65.1 65 49.2
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 6.5e-09 65.1 65 49.2
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.5e-09 64.7 50 72.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.5e-08 63.9 69 50.7
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 2.1e-07 60.1 71 46.5


User provided reference genes

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