Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 4.5e-126 454.9 241 100.0
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.3e-85 320.5 230 69.1
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.5e-84 317.0 238 66.4
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.3e-84 315.8 237 65.4
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 9.6e-84 314.3 237 65.0
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 9.6e-84 314.3 232 67.7
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.4e-82 310.5 232 69.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.5e-81 307.0 217 70.5
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 9.9e-81 304.3 238 65.1
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.9e-80 302.8 230 66.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.9e-80 302.8 238 63.4
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 3.8e-80 302.4 233 65.7
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 6.4e-80 301.6 239 64.4
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 6.4e-80 301.6 230 65.2
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.4e-79 300.4 261 61.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.7e-78 296.2 205 71.2
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.5e-78 295.8 232 67.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 7.9e-78 294.7 223 67.7
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.0e-77 294.3 206 71.8
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.9e-77 292.4 214 66.8
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 5.1e-77 292.0 235 61.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 2.5e-76 289.7 210 70.0
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.5e-76 289.7 226 63.7
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.3e-76 289.3 252 60.3
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.3e-75 287.3 239 61.5
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.6e-75 287.0 226 64.2
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 2.1e-75 286.6 212 67.0
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.1e-75 286.6 226 65.9
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 4.8e-75 285.4 218 66.5
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 4.8e-75 285.4 224 63.8
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 8.1e-75 284.6 236 60.2
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.8e-74 283.5 219 63.5
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 3.1e-74 282.7 240 60.4
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 5.3e-74 282.0 231 63.2
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 6.9e-74 281.6 237 60.8
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 9.0e-74 281.2 213 67.1
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 9.0e-74 281.2 240 60.0
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 2.6e-73 279.6 209 62.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 3.4e-73 279.3 210 65.2
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 5.8e-73 278.5 210 65.2
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.3e-72 277.3 209 65.1
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.3e-72 277.3 236 57.6
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.7e-72 276.9 231 64.5
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.7e-72 276.9 240 63.3
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.8e-72 275.8 253 56.1
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 3.8e-72 275.8 238 59.7
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 6.4e-72 275.0 227 61.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.4e-71 273.9 210 64.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.2e-70 270.8 217 65.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.2e-70 270.8 214 63.6
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.2e-70 270.8 231 62.3
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 2.1e-70 270.0 200 68.0
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.6e-70 268.9 212 65.6
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 3.0e-69 266.2 217 62.2
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.9e-69 265.8 214 63.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 3.9e-69 265.8 240 61.2
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 5.1e-69 265.4 210 66.7
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.1e-68 264.2 242 58.3
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.3e-68 262.3 231 61.5
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 5.6e-68 261.9 209 60.3
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 5.6e-68 261.9 202 61.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.4e-68 261.5 224 59.8
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 9.6e-68 261.2 209 60.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 9.6e-68 261.2 220 61.8
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.1e-67 260.0 233 57.5
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 2.4e-66 256.5 238 58.4
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.1e-66 256.1 205 61.0
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 5.3e-66 255.4 207 62.3
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 9.0e-66 254.6 190 66.3
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.6e-65 253.1 203 65.5
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 3.4e-65 252.7 215 59.5
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.4e-65 252.7 215 58.6
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 7.6e-65 251.5 206 60.2
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.7e-64 250.4 206 62.1
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 4.9e-64 248.8 230 56.1
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 6.5e-64 248.4 240 57.9
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.5e-64 248.4 237 58.2
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 4.2e-63 245.7 228 59.6
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.1e-62 243.4 222 56.3
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.7e-62 243.0 214 60.7
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 6.0e-62 241.9 204 59.3
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.3e-61 240.0 240 54.2
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.5e-60 237.3 217 59.4
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.5e-60 236.5 237 56.1
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.5e-60 236.5 237 56.1
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.3e-60 235.7 246 52.0
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 5.7e-60 235.3 241 55.6
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 7.4e-60 235.0 233 55.8
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.4e-60 235.0 216 56.5
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 9.6e-60 234.6 231 56.3
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.3e-59 234.2 233 55.8
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 4.8e-59 232.3 233 55.8
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 6.3e-59 231.9 246 51.2
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 8.2e-59 231.5 211 58.3
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 5.3e-58 228.8 233 54.5
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 9.0e-58 228.0 196 57.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.5e-57 227.3 227 52.4
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.5e-57 227.3 227 52.4
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.6e-57 226.5 230 52.2
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 3.4e-57 226.1 237 52.3
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.3e-56 224.2 209 57.9
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.2e-56 223.4 233 53.6
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.9e-56 223.0 227 51.1
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.9e-56 223.0 227 51.1
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 3.8e-56 222.6 246 50.4
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 5.0e-56 222.2 198 56.6
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 6.5e-56 221.9 216 54.2
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.6e-54 217.2 202 52.5
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 4.6e-54 215.7 213 55.4
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 7.9e-54 214.9 190 58.4
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.7e-53 211.8 213 53.5
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 8.7e-53 211.5 199 55.8
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 8.7e-53 211.5 250 51.2
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-52 211.1 211 53.1
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-52 211.1 211 53.1
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-52 211.1 211 53.1
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.1e-52 211.1 211 53.1
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.5e-52 210.7 213 53.1
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 5.7e-52 208.8 201 54.7
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 4.8e-51 205.7 257 48.6
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 4.8e-51 205.7 257 48.6
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 4.8e-51 205.7 165 63.0
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.3e-51 205.3 218 52.3
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 8.2e-51 204.9 186 51.6
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.8e-50 203.8 197 55.3
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 3.1e-50 203.0 253 48.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 2.0e-49 200.3 209 55.0
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.0e-48 198.0 199 51.8
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.9e-47 193.7 158 60.8
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.6e-46 190.7 202 52.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.7e-46 189.9 215 52.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-45 187.6 165 58.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.5e-44 184.1 213 53.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 3.3e-44 183.0 184 49.5
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 6.3e-43 178.7 169 56.2
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 8.2e-43 178.3 205 47.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.1e-42 177.9 202 48.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.4e-42 177.6 221 44.8
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 3.4e-41 172.9 220 48.2
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.9e-41 172.2 196 50.5
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.2e-40 170.2 215 50.2
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.1e-39 167.9 203 45.8
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.5e-39 166.8 203 46.3
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 3.2e-39 166.4 143 61.5
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 4.2e-39 166.0 203 45.8
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.2e-38 164.5 194 46.9
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.1e-38 162.2 207 45.9
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.3e-37 160.2 244 41.8
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 5.2e-37 159.1 203 49.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 5.2e-37 159.1 206 41.3
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 8.8e-37 158.3 227 42.7
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.0e-36 157.1 218 39.4
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.0e-36 157.1 217 39.2
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.4e-34 150.2 151 52.3
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 5.3e-34 149.1 138 59.4
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.0e-34 148.7 197 44.7
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 8.0e-30 135.2 129 55.0
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 7.0e-26 122.1 163 44.2
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.5e-25 119.8 163 43.6
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.2e-24 117.1 200 41.5
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 7.7e-17 92.0 90 56.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.9e-16 90.1 101 51.5
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 8.5e-16 88.6 90 51.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 8.5e-16 88.6 76 59.2
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.6e-14 83.2 157 34.4
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.0e-12 77.4 69 59.4
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.4e-10 70.5 63 58.7
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 3.1e-10 70.1 63 55.6
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 8.6e-08 62.0 232 22.4


User provided reference genes

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