Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 4.2e-71 271.2 128 100.0
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 5.7e-36 154.5 112 60.7
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 7.4e-36 154.1 121 55.4
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.8e-35 152.1 121 54.5
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 5.9e-33 144.4 127 49.6
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.2e-30 136.7 98 60.2
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.2e-30 136.7 98 60.2
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.2e-30 136.7 98 59.2
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.1e-30 136.0 111 55.0
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 2.7e-30 135.6 134 47.0
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 3.6e-30 135.2 119 52.9
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 3.6e-30 135.2 148 45.3
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 3.6e-30 135.2 97 57.7
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 7.9e-30 134.0 140 45.7
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 7.9e-30 134.0 151 45.0
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.0e-29 133.7 121 50.4
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.4e-29 133.3 117 51.3
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 2.3e-29 132.5 96 59.4
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 6.7e-29 131.0 121 47.9
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 6.7e-29 131.0 96 57.3
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 6.7e-29 131.0 96 58.3
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 8.8e-29 130.6 98 56.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-28 130.2 96 58.3
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-28 130.2 96 58.3
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.1e-28 130.2 96 56.2
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.5e-28 129.8 98 56.1
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.5e-28 129.8 103 54.4
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.5e-28 129.8 96 57.3
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.5e-28 129.8 96 57.3
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.5e-28 129.8 97 56.7
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 2.0e-28 129.4 98 56.1
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.6e-28 129.0 96 56.2
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 3.3e-28 128.6 96 55.2
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.4e-28 128.3 98 54.1
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 5.7e-28 127.9 102 56.9
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 5.7e-28 127.9 96 57.3
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 7.4e-28 127.5 96 57.3
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 7.4e-28 127.5 96 57.3
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 7.4e-28 127.5 99 55.6
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 7.4e-28 127.5 96 57.3
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.3e-27 126.7 96 57.3
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.3e-27 126.7 96 56.2
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.7e-27 126.3 95 58.9
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.2e-27 125.9 103 53.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.2e-27 125.9 119 50.4
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 2.8e-27 125.6 97 52.6
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 3.7e-27 125.2 98 53.1
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 3.7e-27 125.2 96 53.1
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 3.7e-27 125.2 103 50.5
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 4.8e-27 124.8 96 54.2
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.8e-27 124.8 117 49.6
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 4.8e-27 124.8 126 49.2
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.3e-27 124.4 103 52.4
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 6.3e-27 124.4 114 51.8
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 6.3e-27 124.4 96 56.2
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 6.3e-27 124.4 96 58.3
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 8.2e-27 124.0 124 47.6
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 8.2e-27 124.0 98 55.1
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.4e-26 123.2 117 47.9
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 1.8e-26 122.9 103 51.5
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.8e-26 122.9 114 50.9
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.4e-26 122.5 117 47.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.1e-26 122.1 96 55.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.1e-26 122.1 96 53.1
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 5.3e-26 121.3 113 51.3
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 7.0e-26 120.9 115 45.2
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 7.0e-26 120.9 97 52.6
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 9.1e-26 120.6 103 50.5
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 9.1e-26 120.6 112 50.0
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.2e-25 120.2 119 46.2
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.2e-25 120.2 91 56.0
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 1.2e-25 120.2 102 51.0
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.5e-25 119.8 114 50.0
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.0e-25 119.4 115 46.1
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 2.0e-25 119.4 117 46.2
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.0e-25 119.4 103 49.5
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 2.6e-25 119.0 114 48.2
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.6e-25 119.0 98 51.0
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.6e-25 119.0 102 52.9
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.5e-25 118.6 96 52.1
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 4.5e-25 118.2 115 46.1
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 5.9e-25 117.9 119 47.9
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.9e-25 117.9 119 47.9
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.9e-25 117.9 119 47.9
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 5.9e-25 117.9 155 35.5
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 7.7e-25 117.5 86 57.0
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.0e-24 117.1 102 50.0
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.0e-24 117.1 96 51.0
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.3e-24 116.7 116 46.6
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.3e-24 116.7 116 46.6
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.3e-24 116.7 101 50.5
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.7e-24 116.3 102 49.0
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.7e-24 116.3 104 47.1
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.7e-24 116.3 96 47.9
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.7e-24 116.3 117 47.9
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.2e-24 115.9 97 49.5
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.9e-24 115.5 102 49.0
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.9e-24 115.5 102 49.0
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.9e-24 115.5 96 52.1
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.9e-24 115.5 118 45.8
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 3.8e-24 115.2 102 49.0
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 3.8e-24 115.2 102 49.0
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 3.8e-24 115.2 122 41.0
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 5.0e-24 114.8 97 49.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.5e-23 113.2 96 50.0
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 1.5e-23 113.2 119 44.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.9e-23 112.8 96 51.0
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.5e-23 112.5 96 50.0
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.2e-23 112.1 119 45.4
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 3.2e-23 112.1 95 49.5
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 4.2e-23 111.7 118 43.2
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 4.2e-23 111.7 117 43.6
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 7.2e-23 110.9 116 44.0
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 7.2e-23 110.9 92 50.0
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.2e-22 110.2 96 47.9
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.2e-22 110.2 91 51.6
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.2e-22 110.2 116 44.8
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.2e-22 110.2 114 42.1
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.6e-22 109.8 120 43.3
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.6e-22 108.6 95 50.5
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 3.6e-22 108.6 97 49.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.6e-22 108.6 89 51.7
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 4.7e-22 108.2 90 54.4
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 4.7e-22 108.2 95 47.4
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 6.1e-22 107.8 95 47.4
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 6.1e-22 107.8 95 47.4
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.0e-21 107.1 98 48.0
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.0e-21 107.1 121 43.8
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.8e-21 106.3 100 44.0
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.3e-21 105.9 100 47.0
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.3e-21 105.9 119 42.9
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 8.8e-21 104.0 95 46.3
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.1e-20 103.6 92 45.7
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.5e-20 103.2 92 48.9
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.5e-20 103.2 92 48.9
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 3.3e-20 102.1 94 51.1
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 4.4e-20 101.7 92 47.8
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 4.4e-20 101.7 92 47.8
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 4.4e-20 101.7 92 47.8
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 4.4e-20 101.7 92 47.8
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 5.7e-20 101.3 94 43.6
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 7.4e-20 100.9 92 47.8
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 7.4e-20 100.9 92 47.8
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 9.7e-20 100.5 92 47.8
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.3e-19 100.1 94 42.6
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.7e-19 99.8 118 44.1
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.7e-19 99.8 87 47.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.8e-19 99.0 92 47.8
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.7e-19 98.6 92 47.8
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.7e-19 98.6 92 47.8
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 3.7e-19 98.6 116 39.7
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 3.7e-19 98.6 101 45.5
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 3.7e-19 98.6 101 45.5
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.1e-18 97.1 89 47.2
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.1e-18 97.1 92 44.6
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.1e-18 97.1 79 50.6
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.1e-18 97.1 100 45.0
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.1e-18 95.1 91 47.3
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 4.1e-18 95.1 131 38.2
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 7.0e-18 94.4 86 48.8
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 7.0e-18 94.4 79 49.4
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 7.0e-18 94.4 116 40.5
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 2.0e-17 92.8 79 50.6
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.0e-17 92.8 119 39.5
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.6e-17 92.4 113 38.9
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.0e-16 90.5 57 66.7
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.0e-16 90.5 90 43.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.2e-16 89.4 92 43.5
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 9.4e-15 84.0 102 37.3
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 3.6e-14 82.0 75 48.0
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.4e-13 80.1 66 54.5
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.0e-13 79.0 63 52.4
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 3.4e-12 75.5 60 51.7
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 9.8e-12 73.9 52 61.5
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 6.3e-11 71.2 108 33.3
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 7.0e-10 67.8 106 32.1
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.0e-08 63.9 44 54.5
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 2.2e-08 62.8 37 67.6
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 1.9e-07 59.7 70 35.7
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 5.5e-07 58.2 70 30.0
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 5.5e-07 58.2 72 33.3
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 2.7e-06 55.8 89 31.5
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 8.0e-06 54.3 89 34.8


User provided reference genes

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