Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 6.3e-199 697.2 341 100.0
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 7.6e-128 461.1 339 67.3
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 1.4e-126 456.8 341 67.4
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 5.4e-126 454.9 349 64.5
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 9.2e-126 454.1 348 66.4
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 1.2e-125 453.8 347 64.6
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 2.1e-125 453.0 351 66.1
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 2.7e-125 452.6 313 68.7
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 1.3e-124 450.3 343 66.8
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 6.6e-124 448.0 341 63.9
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 1.9e-123 446.4 342 66.1
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.9e-123 446.4 343 64.1
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 7.3e-123 444.5 341 63.9
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 9.6e-123 444.1 344 64.5
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.2e-122 443.7 297 70.7
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 1.6e-122 443.4 342 63.7
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 2.8e-122 442.6 345 64.1
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 4.7e-122 441.8 344 64.0
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 1.8e-121 439.9 307 69.4
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 2.4e-121 439.5 340 65.3
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 8.9e-121 437.6 335 65.1
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 7.6e-120 434.5 345 63.2
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 9.9e-120 434.1 341 62.5
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 2.9e-119 432.6 357 60.8
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 2.9e-119 432.6 338 64.2
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 2.9e-119 432.6 340 64.4
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 3.8e-119 432.2 344 61.9
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 4.9e-119 431.8 337 64.4
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 6.4e-119 431.4 320 65.9
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 6.4e-119 431.4 337 63.5
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.1e-118 430.6 353 61.2
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.1e-118 430.6 345 64.1
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 4.2e-118 428.7 341 62.5
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 5.4e-118 428.3 343 60.3
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 7.1e-118 427.9 348 61.8
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 7.1e-118 427.9 339 63.4
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 9.3e-118 427.6 343 62.4
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 1.2e-117 427.2 342 62.6
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 1.6e-117 426.8 332 62.7
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 1.6e-117 426.8 334 64.4
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 2.1e-117 426.4 343 61.2
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 2.1e-117 426.4 343 63.6
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 2.1e-117 426.4 345 60.6
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 2.7e-117 426.0 304 68.1
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.7e-117 426.0 302 66.9
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 2.7e-117 426.0 337 62.3
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 7.8e-117 424.5 346 62.4
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 1.0e-116 424.1 342 61.7
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 1.0e-116 424.1 336 62.2
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 1.0e-116 424.1 342 62.6
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 1.7e-116 423.3 342 61.7
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 3.9e-116 422.2 341 62.8
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 1.1e-115 420.6 341 61.0
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 1.5e-115 420.2 347 60.2
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 2.5e-115 419.5 309 64.7
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 2.5e-115 419.5 358 60.1
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 3.3e-115 419.1 339 61.1
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 9.6e-115 417.5 346 60.4
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 2.1e-114 416.4 367 61.0
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 2.8e-114 416.0 347 60.5
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 8.1e-114 414.5 341 60.1
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 1.4e-113 413.7 290 68.6
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 1.4e-113 413.7 329 63.8
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 1.8e-113 413.3 345 60.9
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 3.1e-113 412.5 341 58.1
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 2.0e-112 409.8 346 58.4
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 2.0e-112 409.8 312 64.1
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 3.4e-112 409.1 341 59.2
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 4.4e-112 408.7 328 62.5
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 5.8e-112 408.3 323 62.2
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 5.8e-112 408.3 323 62.2
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 5.8e-112 408.3 357 58.0
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 6.4e-111 404.8 346 58.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.2e-110 402.1 313 64.5
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 7.9e-109 397.9 346 59.2
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 1.7e-108 396.7 270 68.9
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.7e-108 396.7 315 64.4
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 3.0e-108 396.0 346 58.7
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 8.7e-108 394.4 346 58.4
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.9e-107 393.3 350 59.7
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 3.3e-107 392.5 311 61.7
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 6.2e-106 388.3 345 58.3
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 9.0e-105 384.4 346 56.6
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.2e-104 384.0 309 63.1
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 2.6e-104 382.9 346 58.4
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 2.6e-104 382.9 346 58.4
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 2.9e-103 379.4 345 56.8
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 2.9e-103 379.4 347 57.1
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 8.4e-103 377.9 215 79.5
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 1.6e-101 373.6 317 58.4
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 3.5e-101 372.5 288 61.1
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 4.8e-98 362.1 317 57.4
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 8.1e-98 361.3 269 61.7
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 4.0e-97 359.0 325 56.0
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 9.0e-97 357.8 246 68.3
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 2.0e-96 356.7 285 59.3
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 2.6e-88 329.7 349 51.0
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 4.5e-88 328.9 342 50.9
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 8.5e-87 324.7 282 59.9
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 3.6e-77 292.7 249 60.6
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 1.1e-75 287.7 347 45.2
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.4e-70 270.8 288 47.9
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 3.9e-68 262.7 289 46.4
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 5.2e-68 262.3 377 39.8
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.8e-65 253.8 222 55.4
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 3.1e-65 253.1 313 41.5
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 7.2e-62 241.9 223 57.0
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.2e-61 241.1 229 58.5
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 7.5e-59 231.9 190 62.6
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 6.3e-58 228.8 318 43.7
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 1.4e-57 227.6 246 43.1
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 3.1e-49 199.9 277 40.8
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 3.5e-48 196.4 342 36.0
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 1.2e-40 171.4 166 48.2
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 2.0e-32 144.1 184 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 1.5e-30 137.9 106 57.5
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.3e-28 130.6 151 49.7
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 1.3e-18 98.2 147 42.2
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 1.3e-15 88.2 167 38.3
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 7.6e-11 72.4 42 71.4
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 7.1e-09 65.9 101 40.6
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 7.8e-08 62.4 33 78.8
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 4.3e-06 56.6 69 39.1


User provided reference genes

Program Settings