Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 2.0e-95 352.4 179 100.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 2.5e-82 308.9 179 86.0
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.1e-80 303.5 179 83.8
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.2e-77 291.6 179 81.6
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.6e-76 289.7 179 79.9
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.6e-76 288.1 178 80.9
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.0e-75 287.0 178 79.2
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.6e-75 284.3 178 79.2
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.7e-75 283.9 170 84.1
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 8.7e-75 283.9 186 79.6
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.9e-74 282.7 178 79.2
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 2.5e-74 282.3 179 78.8
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 2.5e-74 282.3 169 85.2
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 3.3e-74 282.0 169 84.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 9.6e-74 280.4 179 77.7
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.3e-73 280.0 180 78.9
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.6e-73 279.6 180 78.9
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 77.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 77.7
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 76.0
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 78.8
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.4e-72 276.6 174 78.7
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 77.7
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 76.0
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 77.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 76.5
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 76.0
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 3.1e-72 275.4 178 77.5
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 77.7
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.9e-72 274.2 175 76.0
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 76.0
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 9.0e-72 273.9 175 78.9
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 9.0e-72 273.9 176 79.5
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 77.1
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.0e-72 273.9 175 78.9
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.2e-71 273.5 176 79.0
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.2e-71 273.5 178 75.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 75.4
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.6e-71 272.3 179 77.7
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.4e-71 271.9 179 74.9
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 3.4e-71 271.9 179 75.4
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 75.4
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 77.1
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 4.5e-71 271.6 172 76.7
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 74.9
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 4.5e-71 271.6 178 76.4
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 76.5
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 5.8e-71 271.2 170 78.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 7.6e-71 270.8 178 74.7
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.9e-70 268.9 175 77.1
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.8e-70 268.5 178 74.2
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.8e-70 268.5 175 77.1
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 76.0
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.9e-70 268.1 173 79.8
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 74.3
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 76.5
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 73.7
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.1e-69 266.9 173 77.5
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.1e-69 266.9 175 76.0
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 74.9
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.4e-69 266.5 175 74.9
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 76.0
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.3
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.2e-69 265.0 169 77.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 4.2e-69 265.0 202 70.8
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 4.2e-69 265.0 173 77.5
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 71.5
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.9
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 9.3e-69 263.8 169 78.7
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.7
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.7
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 74.9
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.8e-67 259.6 179 72.1
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 73.7
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 73.2
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 76.0
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 3.0e-67 258.8 173 75.1
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 73.7
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 73.2
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.1e-66 256.9 169 76.3
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.5e-66 256.5 176 73.3
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 176 73.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.5e-66 255.8 169 75.1
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.3e-66 255.4 179 72.1
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 3.3e-66 255.4 179 72.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 4.3e-66 255.0 176 73.9
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 72.1
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 69.8
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 71.5
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 70.9
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.4e-66 254.2 179 72.1
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.4e-66 254.2 179 72.6
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 9.6e-66 253.8 175 72.6
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.3e-65 253.4 175 72.0
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.3e-65 253.4 174 73.0
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 72.6
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 71.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 2.8e-65 252.3 174 73.6
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 3.7e-65 251.9 169 76.3
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 4.8e-65 251.5 165 76.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 6.2e-65 251.1 173 72.8
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 8.1e-65 250.8 175 71.4
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.1e-65 250.8 216 62.5
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.4e-64 250.0 178 71.3
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.8e-64 249.6 171 73.1
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 4.0e-64 248.4 179 69.3
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.0e-63 246.1 171 71.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 3.4e-63 245.4 176 68.8
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 3.4e-63 245.4 169 74.6
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 4.5e-63 245.0 172 73.3
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.8e-63 244.6 157 79.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.0e-62 243.8 175 69.7
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.0e-62 243.8 201 65.2
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.0e-62 243.8 168 73.2
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 3.8e-62 241.9 171 70.8
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 4.9e-62 241.5 171 70.8
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 8.4e-62 240.7 179 69.3
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.9e-61 239.6 171 70.8
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.9e-61 239.6 175 71.4
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 3.2e-61 238.8 171 70.2
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.0e-59 232.3 169 70.4
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 3.9e-59 231.9 176 65.3
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.5e-58 229.2 159 74.2
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 5.3e-56 221.5 171 67.3
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 6.5e-54 214.5 150 73.3
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.9e-53 213.0 150 72.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 2.7e-52 209.1 146 72.6
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.2e-49 199.5 120 85.0
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.2e-47 193.7 129 77.5
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.0e-47 193.0 170 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.5e-47 191.8 162 58.0
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 8.5e-46 187.6 169 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 3.2e-45 185.7 179 53.1
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.4e-43 180.3 165 56.4
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 8.8e-43 177.6 168 53.0
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.1e-42 177.2 115 78.3
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 2.5e-42 176.0 117 77.8
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.3e-41 173.7 163 55.8
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.9e-38 162.5 155 58.7
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.5e-37 159.5 198 52.5
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 5.5e-37 158.3 171 53.2
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 4.7e-36 155.2 161 52.8
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 6.1e-36 154.8 105 76.2
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.9e-35 152.1 222 42.3
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 3.1e-32 142.5 164 48.2
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 7.0e-32 141.4 86 77.9
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.5e-31 140.2 83 79.5
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.7e-30 136.7 83 77.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 6.5e-30 134.8 139 55.4
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 6.5e-30 134.8 83 75.9
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.6e-28 129.0 93 68.8
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.4e-26 122.1 89 66.3
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 2.2e-25 119.8 89 67.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.0e-22 110.9 117 55.6
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 5.0e-22 108.6 97 59.8
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 5.0e-22 108.6 82 65.9
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-21 107.5 75 74.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 2.7e-20 102.8 138 49.3
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 2.5e-13 79.7 217 33.2
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 8.0e-12 74.7 59 59.3
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 4.0e-11 72.4 76 50.0
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.2e-09 66.6 146 34.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 4.1e-08 62.4 42 64.3
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.0e-07 60.1 44 59.1
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 3.5e-07 59.3 85 44.7


User provided reference genes

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