Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.1e-190 668.3 334 100.0
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 3.0e-44 183.3 365 37.5
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.5e-43 181.0 342 38.3
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 7.1e-38 162.2 366 34.2
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.7e-36 155.6 381 32.5
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.5e-35 153.7 392 32.9
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.3e-35 153.3 388 33.8
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.6e-34 151.0 382 33.8
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.4e-32 143.3 381 31.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.1e-30 138.3 383 31.6
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.0e-28 131.7 375 29.1
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 1.0e-28 131.7 342 33.9
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 2.1e-26 124.0 377 30.0
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-26 124.0 315 32.4
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.1e-25 121.7 332 31.9
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.8e-25 120.9 369 29.3
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 2.4e-25 120.6 377 30.0
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 2.4e-25 120.6 317 31.9
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 6.9e-25 119.0 380 27.4
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 1.5e-24 117.9 337 32.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.0e-24 117.5 346 31.5
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.6e-24 117.1 345 29.3
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 4.9e-23 112.8 360 30.3
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 1.9e-22 110.9 341 29.3
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 2.5e-22 110.5 338 28.1
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 5.5e-22 109.4 345 29.0
AUR62036468 Chenopodium quinoa HOM05D038882 ORTHO05D003355 3.5e-21 106.7 304 31.6
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 4.6e-21 106.3 341 27.9
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 7.9e-21 105.5 368 26.9
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.0e-20 105.1 108 49.1
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.0e-20 105.1 89 53.9
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.0e-20 105.1 132 43.9
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.0e-20 103.6 105 50.5
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 3.9e-20 103.2 368 28.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 3.9e-20 103.2 340 28.8
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 6.7e-20 102.4 383 27.7
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.7e-20 102.4 108 48.1
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 8.7e-20 102.1 359 27.0
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.5e-19 100.5 252 31.0
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 2.5e-19 100.5 307 28.0
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 3.3e-19 100.1 93 54.8
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 4.3e-19 99.8 141 41.1
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 9.6e-19 98.6 142 40.1
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.6e-18 97.8 90 53.3
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 2.1e-18 97.4 90 54.4
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 2.8e-18 97.1 88 51.1
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 3.7e-18 96.7 89 51.7
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 3.7e-18 96.7 319 27.3
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 3.7e-18 96.7 368 29.1
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 8.2e-18 95.5 304 27.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.4e-17 94.7 178 34.3
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 2.4e-17 94.0 142 38.7
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 2.4e-17 94.0 132 39.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.4e-17 94.0 134 40.3
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 3.1e-17 93.6 252 29.8
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 4.1e-17 93.2 377 26.3
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 5.3e-17 92.8 145 42.1
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 6.9e-17 92.4 364 26.4
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 6.9e-17 92.4 364 26.4
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 9.0e-17 92.0 379 26.9
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.4e-16 90.1 132 38.6
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 5.9e-16 89.4 318 28.9
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 7.6e-16 89.0 89 49.4
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 2.2e-15 87.4 309 28.5
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 2.9e-15 87.0 133 36.8
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 2.9e-15 87.0 133 36.8
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.5e-15 85.9 311 28.6
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 1.1e-14 85.1 308 27.9
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.4e-14 84.7 234 33.8
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.4e-14 84.7 298 27.2
AUR62017115 Chenopodium quinoa HOM05D038882 ORTHO05D003355 2.5e-14 84.0 172 36.0
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.2e-14 83.2 206 32.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 7.2e-14 82.4 98 41.8
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 9.3e-14 82.0 247 26.7
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.6e-13 81.3 193 29.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.1e-13 80.9 86 44.2
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.1e-13 80.9 82 45.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.7e-13 80.5 93 43.0
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 3.6e-13 80.1 92 44.6
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 7.9e-13 79.0 91 41.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 7.9e-13 79.0 89 42.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.8e-12 77.8 98 38.8
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-12 77.8 106 38.7
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 3.0e-12 77.0 104 37.5
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.9e-12 76.6 84 41.7
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 5.1e-12 76.3 239 31.8
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.1e-12 76.3 157 31.8
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 6.7e-12 75.9 142 31.7
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 8.7e-12 75.5 103 35.9
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.1e-11 75.1 85 43.5
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 1.1e-11 75.1 73 46.6
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.1e-11 75.1 120 32.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.5e-11 74.7 98 38.8
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.5e-11 74.7 222 29.7
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.9e-11 74.3 102 38.2
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.5e-11 73.9 125 33.6
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.7e-11 72.8 81 44.4
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 5.7e-11 72.8 88 40.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 7.4e-11 72.4 82 45.1
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 7.4e-11 72.4 88 39.8
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 7.4e-11 72.4 302 24.2
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 7.4e-11 72.4 109 38.5
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 9.7e-11 72.0 86 37.2
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 9.7e-11 72.0 85 40.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 9.7e-11 72.0 82 39.0
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 9.7e-11 72.0 120 30.0
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.3e-10 71.6 82 41.5
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.6e-10 71.2 91 36.3
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.6e-10 71.2 82 40.2
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.6e-10 71.2 82 41.5
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 2.2e-10 70.9 165 32.1
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 2.2e-10 70.9 92 34.8
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.2e-10 70.9 207 26.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.8e-10 70.5 127 32.3
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 4.8e-10 69.7 67 44.8
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.8e-10 69.7 91 35.2
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.8e-10 69.7 81 40.7
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 6.3e-10 69.3 82 41.5
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 6.3e-10 69.3 88 38.6
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 8.2e-10 68.9 102 38.2
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 8.2e-10 68.9 178 29.8
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 8.2e-10 68.9 88 38.6
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.1e-09 68.6 89 37.1
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.1e-09 68.6 86 37.2
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.1e-09 68.6 87 37.9
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.4e-09 68.2 98 38.8
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.8e-09 67.8 87 40.2
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.8e-09 67.8 86 37.2
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.4e-09 67.4 89 41.6
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 3.1e-09 67.0 312 24.0
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 5.3e-09 66.2 67 44.8
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 5.3e-09 66.2 86 34.9
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 5.3e-09 66.2 86 36.0
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.3e-09 66.2 126 31.7
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 9.1e-09 65.5 193 30.1
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 9.1e-09 65.5 93 37.6
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.2e-08 65.1 82 37.8
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.5e-08 64.7 81 39.5
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.5e-08 64.7 91 34.1
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.5e-08 64.7 150 30.7
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.0e-08 64.3 81 38.3
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.0e-08 64.3 70 41.4
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.0e-08 64.3 117 30.8
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.6e-08 63.9 81 39.5
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.6e-08 63.9 91 38.5
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.6e-08 63.9 82 39.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.4e-08 63.5 79 39.2
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.4e-08 63.5 86 34.9
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.9e-08 62.8 82 39.0
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.9e-08 62.8 84 38.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 7.7e-08 62.4 88 38.6
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 7.7e-08 62.4 97 35.1
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.0e-07 62.0 65 43.1
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.0e-07 62.0 83 36.1
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 1.0e-07 62.0 164 29.3
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 1.0e-07 62.0 104 32.7
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.0e-07 62.0 230 23.0
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.3e-07 61.6 118 27.1
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.3e-07 61.6 82 40.2
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.3e-07 61.6 163 25.8
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.3e-07 61.6 84 36.9
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 2.9e-07 60.5 67 40.3
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.9e-07 60.5 98 36.7
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 3.8e-07 60.1 74 40.5
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.0e-07 59.7 142 31.0
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 5.0e-07 59.7 57 49.1
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 6.5e-07 59.3 63 44.4
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 6.5e-07 59.3 73 39.7
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 6.5e-07 59.3 99 36.4
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 6.5e-07 59.3 99 36.4
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 6.5e-07 59.3 73 39.7
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 6.5e-07 59.3 82 35.4
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 8.5e-07 58.9 157 28.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 8.5e-07 58.9 154 31.2
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.1e-06 58.5 69 39.1
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.1e-06 58.5 69 39.1
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.4e-06 58.2 57 43.9
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.4e-06 58.2 84 35.7
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.9e-06 57.8 81 34.6
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.5e-06 57.4 79 35.4
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.5e-06 57.4 82 31.7
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.2e-06 57.0 111 29.7
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.2e-06 56.6 91 37.4
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.2e-06 56.6 78 35.9
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 7.2e-06 55.8 63 42.9


User provided reference genes

Program Settings