Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 3214.1 1728 100.0
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1233.4 1775 47.4
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1205.3 1775 46.9
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.2e-142 511.1 1837 32.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 9.8e-123 446.4 1821 30.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 2.2e-119 435.3 1776 30.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.1e-118 433.0 1792 31.0
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.5e-110 406.0 1851 28.2
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 9.8e-107 393.3 1850 29.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.3e-106 392.9 1872 27.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.5e-102 379.4 1860 28.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 3.1e-100 371.7 1834 27.8
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.0e-96 359.0 1814 29.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.0e-96 359.0 1898 29.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.5e-94 352.8 1955 28.2
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.9e-94 352.4 1892 28.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.5e-94 352.1 1956 28.6
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 7.3e-94 350.5 1850 27.8
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 9.5e-94 350.1 1907 27.5
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 8.9e-92 343.6 1915 28.3
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.2e-89 333.6 1834 28.5
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.7e-87 329.3 1843 27.4
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 6.6e-87 327.4 1756 29.2
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 9.5e-86 323.6 1878 28.3
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.4e-83 315.1 1788 28.6
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 5.8e-83 314.3 1959 28.0
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 1.7e-82 312.8 1778 27.1
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.1e-81 310.1 1814 27.3
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.9e-79 301.6 1821 26.1
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.6e-78 297.7 1755 28.3
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 6.2e-77 294.3 2002 27.5
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.8e-76 292.7 1899 27.8
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-73 283.5 1902 27.1
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.4e-73 283.1 1999 26.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 5.4e-73 281.2 1956 26.8
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 7.1e-73 280.8 2020 26.9
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.1e-72 279.3 1852 26.3
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.7e-71 276.2 1835 27.1
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.1e-70 273.5 1804 26.7
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 1.1e-70 273.5 843 33.8
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.5e-70 273.1 1958 26.5
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.9e-70 272.7 648 37.2
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.3e-70 270.8 1820 27.3
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.1e-69 269.2 1818 26.9
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.8e-69 268.9 1864 26.3
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.8e-69 268.1 726 33.7
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 3.1e-68 265.4 1719 26.5
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.3e-68 264.6 1927 27.7
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 5.3e-68 264.6 1787 28.7
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.0e-67 262.7 1869 28.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.8e-67 261.2 631 38.0
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 9.9e-67 260.4 1881 26.7
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.8e-66 258.5 1822 27.5
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 4.9e-66 258.1 1943 26.8
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.4e-65 255.8 336 48.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 3.2e-65 255.4 1919 25.7
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.2e-65 255.4 1951 27.2
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.0e-63 250.4 1547 26.2
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.1e-63 248.1 1031 29.3
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 8.7e-63 247.3 1023 31.1
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.5e-62 246.5 1023 30.3
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 3.1e-60 238.8 1782 25.0
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.2e-59 236.9 1802 26.0
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.2e-59 236.9 1859 26.3
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.8e-59 234.6 1783 26.5
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 7.6e-59 234.2 1769 25.0
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.9e-58 232.3 1766 27.1
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 5.5e-57 228.0 2048 25.0
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.5e-54 219.9 1775 25.6
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.5e-54 219.9 1830 26.2
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.9e-54 219.5 1856 25.6
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.4e-54 217.6 846 29.6
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 9.6e-54 217.2 1816 25.7
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 9.6e-54 217.2 1819 24.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.1e-52 213.8 817 31.5
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.4e-52 213.4 611 35.5
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.3e-50 206.8 1834 27.3
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.8e-50 205.3 728 35.4
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.1e-49 203.8 1801 26.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.9e-49 203.0 1786 24.6
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.8e-47 196.4 576 33.5
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.8e-47 196.4 656 35.4
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 8.7e-47 194.1 1772 25.2
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 2.5e-46 192.6 1850 25.5
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.2e-45 189.5 476 39.7
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.4e-44 186.0 1813 25.4
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 4.1e-44 185.3 1815 25.7
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.5e-43 183.3 647 31.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.6e-43 182.6 1772 26.2
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 5.5e-41 174.9 664 34.9
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 3.3e-38 165.6 734 33.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 7.4e-38 164.5 506 30.6
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.7e-37 163.3 664 33.4
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.7e-37 162.2 1861 24.7
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 6.3e-37 161.4 670 32.2
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.4e-36 160.2 1808 23.7
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.4e-36 159.5 2048 25.1
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.2e-35 157.1 1525 24.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-34 153.7 498 35.9
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.7e-34 153.3 1797 24.0
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 2.9e-34 152.5 677 31.8
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.5e-33 149.4 1760 24.5
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 5.5e-33 148.3 1870 25.5
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 6.1e-32 144.8 672 27.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 1.4e-31 143.7 1824 24.7
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.1e-30 140.6 1789 24.8
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 4.4e-30 138.7 290 38.6
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.3e-29 137.1 1802 24.4
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 3.4e-27 129.0 666 32.7
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-22 114.0 462 35.9
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-22 113.6 216 37.5
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 4.8e-21 108.6 1839 24.3
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.0e-19 103.2 625 26.2
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 2.9e-18 99.4 1806 22.8
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.8e-18 99.0 1963 23.8
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.1e-17 97.4 75 64.0
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.9e-17 96.7 632 28.3
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.9e-17 96.7 1963 23.4
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 5.5e-17 95.1 250 34.0
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 7.2e-17 94.7 87 66.7
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 2.1e-16 93.2 250 34.0
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.7e-16 92.8 270 38.5
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.0e-15 90.9 1955 23.5
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 6.7e-15 88.2 248 30.6
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.1e-12 79.3 345 25.8
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 4.1e-12 79.0 202 34.7
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 9.1e-12 77.8 266 36.8
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.2e-11 77.4 194 30.9
AUR62044126 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.7e-11 74.7 113 44.2
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 7.7e-11 74.7 78 47.4
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.9e-10 72.8 67 56.7
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 3.8e-10 72.4 77 48.1
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 5.0e-10 72.0 56 58.9
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 5.0e-10 72.0 527 25.8
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.1e-09 70.9 210 32.9
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.5e-09 70.5 206 32.5
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.2e-09 69.3 325 23.1
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 8.0e-08 64.7 77 42.9
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.0e-07 64.3 58 63.8
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.4e-07 63.9 186 30.6
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 6.8e-07 61.6 66 47.0
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 8.8e-07 61.2 63 52.4
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 8.8e-07 61.2 73 53.4
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 5.7e-06 58.5 59 49.2


User provided reference genes

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