Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 7.4e-77 290.4 143 100.0
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 8.3e-44 180.6 149 67.1
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.8e-43 179.5 144 65.3
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 9.5e-40 167.2 143 64.3
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 2.1e-39 166.0 142 63.4
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.8e-39 165.6 148 62.2
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.8e-39 165.6 148 62.2
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 4.7e-39 164.9 143 65.7
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 4.7e-39 164.9 143 64.3
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.7e-39 164.9 147 61.9
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.4e-38 163.3 147 63.9
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 5.2e-38 161.4 143 63.6
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 8.9e-38 160.6 141 61.0
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.2e-37 160.2 147 61.2
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.5e-37 159.8 145 60.7
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.5e-37 159.8 147 59.9
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 5.7e-37 157.9 142 64.1
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 5.7e-37 157.9 141 60.3
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.3e-36 156.8 146 62.3
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.3e-36 156.8 145 60.7
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.3e-36 156.8 146 58.9
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 2.2e-36 156.0 142 62.7
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 3.7e-36 155.2 140 62.1
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 3.7e-36 155.2 148 59.5
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 4.9e-36 154.8 148 58.1
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 6.3e-36 154.5 142 58.5
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.1e-35 153.7 148 58.1
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.4e-35 153.3 146 60.3
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.4e-35 153.3 140 61.4
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 1.4e-35 153.3 147 62.6
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.4e-35 153.3 149 63.1
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.8e-35 152.9 148 58.1
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 2.4e-35 152.5 141 59.6
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 3.1e-35 152.1 147 61.9
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 3.1e-35 152.1 143 61.5
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 4.1e-35 151.8 143 59.4
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 5.4e-35 151.4 152 57.9
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 7.0e-35 151.0 156 57.7
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 7.0e-35 151.0 147 61.9
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 7.0e-35 151.0 144 59.0
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.2e-34 150.2 149 56.4
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.2e-34 150.2 149 56.4
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.6e-34 149.8 142 62.0
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 2.7e-34 149.1 143 60.1
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 2.7e-34 149.1 143 60.1
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.7e-34 149.1 145 61.4
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 2.7e-34 149.1 141 58.9
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.5e-34 148.7 149 55.7
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 4.5e-34 148.3 145 60.0
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 5.9e-34 147.9 145 60.7
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.0e-33 147.1 144 57.6
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.0e-33 147.1 142 58.5
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 1.7e-33 146.4 140 58.6
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.7e-33 146.4 129 61.2
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 1.7e-33 146.4 145 57.9
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 2.3e-33 146.0 129 60.5
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 2.9e-33 145.6 130 59.2
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.8e-33 145.2 146 56.2
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 5.0e-33 144.8 148 59.5
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 6.6e-33 144.4 141 58.9
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 8.6e-33 144.1 145 57.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 8.6e-33 144.1 129 61.2
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.5e-32 143.3 146 57.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.5e-32 143.3 145 54.5
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.9e-32 142.9 145 58.6
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 2.5e-32 142.5 140 57.1
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 5.6e-32 141.4 145 57.9
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 7.3e-32 141.0 147 53.1
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 7.3e-32 141.0 146 56.8
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 1.2e-31 140.2 140 56.4
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.2e-31 140.2 148 55.4
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.6e-31 139.8 129 58.1
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 2.1e-31 139.4 123 61.8
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 2.1e-31 139.4 143 53.1
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 3.6e-31 138.7 130 62.3
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.7e-31 138.3 125 61.6
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 4.7e-31 138.3 140 56.4
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 6.1e-31 137.9 142 53.5
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.0e-30 137.1 143 56.6
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 1.0e-30 137.1 181 47.5
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.4e-30 136.7 141 56.7
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.8e-30 136.3 142 52.8
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 2.3e-30 136.0 142 52.8
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.2e-29 133.7 141 50.4
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 3.4e-29 132.1 145 53.8
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 4.4e-29 131.7 148 56.8
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.4e-29 131.7 145 53.1
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 7.5e-29 131.0 132 56.1
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 7.5e-29 131.0 145 51.0
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.3e-28 130.2 145 50.3
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.7e-28 129.8 125 60.0
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 1.7e-28 129.8 142 54.9
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 2.9e-28 129.0 133 54.1
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 2.9e-28 129.0 128 59.4
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 6.4e-28 127.9 138 55.1
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 6.4e-28 127.9 146 55.5
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.1e-27 127.1 134 53.7
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 3.2e-27 125.6 128 57.8
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 3.2e-27 125.6 128 57.8
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 4.1e-27 125.2 138 56.5
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 7.0e-27 124.4 124 57.3
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 1.2e-26 123.6 130 56.2
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 2.7e-26 122.5 148 51.4
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 4.6e-26 121.7 124 55.6
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.0e-25 120.6 128 54.7
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.3e-25 120.2 136 55.1
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 8.6e-25 117.5 128 53.9
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 3.3e-24 115.5 122 54.1
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 4.3e-24 115.2 125 56.0
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.2e-23 113.6 152 50.0
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 8.0e-23 110.9 124 53.2
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 6.8e-22 107.8 128 47.7
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.5e-21 106.7 128 50.0
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.3e-20 103.6 89 69.7
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.7e-20 103.2 126 53.2
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 8.3e-20 100.9 144 45.1
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.1e-19 100.5 114 56.1
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 3.2e-19 99.0 134 42.5
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 4.6e-18 95.1 135 40.7
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 6.0e-18 94.7 86 60.5
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.3e-17 93.6 134 43.3
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 6.6e-17 91.3 135 39.3
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-14 84.0 94 54.3
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.2e-13 80.5 128 44.5
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 2.9e-12 75.9 99 51.5
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 3.2e-11 72.4 99 49.5
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 4.1e-11 72.0 55 67.3
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 1.1e-06 57.4 83 45.8
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.4e-06 57.0 105 35.2


User provided reference genes

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