Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 3.9e-105 385.2 252 100.0
Ah.04g166520 Amaranthus hybridus HOM05D005871 ORTHO05D003654 8.6e-20 101.7 257 43.2
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 3.6e-18 96.3 245 35.9
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 4.0e-17 92.8 245 39.6
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 2.0e-16 90.5 247 45.7
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 9.8e-16 88.2 245 36.7
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 2.9e-15 86.7 245 35.5
AUR62017078 Chenopodium quinoa HOM05D005871 ORTHO05D003654 1.6e-13 80.9 207 37.7
Lj6g0021470 Lotus japonicus HOM05D005871 ORTHO05D003654 1.6e-13 80.9 254 31.9
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 2.1e-13 80.5 267 30.7
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 2.7e-13 80.1 268 33.2
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.0e-13 79.0 258 34.9
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 1.7e-12 77.4 237 43.5
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.0e-12 76.6 258 36.8
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 3.0e-12 76.6 250 29.2
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 3.0e-12 76.6 245 29.4
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.9e-12 76.3 258 38.4
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 1.1e-11 74.7 262 28.6
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 1.5e-11 74.3 273 29.7
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 1.5e-11 74.3 242 30.6
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 1.9e-11 73.9 268 32.5
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 1.9e-11 73.9 263 30.4
Medtr5g095630 Medicago truncatula HOM05D005871 ORTHO05D003654 1.9e-11 73.9 264 34.1
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 1.9e-11 73.9 270 28.9
Phvul.006G140600 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 3.3e-11 73.2 251 28.3
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 4.3e-11 72.8 267 36.0
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 1.2e-10 71.2 270 29.3
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 1.2e-10 71.2 259 31.7
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 1.2e-10 71.2 268 28.4
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 1.6e-10 70.9 250 33.6
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 2.1e-10 70.5 258 28.7
TPR.G8596 Trifolium pratense HOM05D005871 ORTHO05D003654 2.8e-10 70.1 267 35.2
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.6e-10 69.7 243 37.0
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 4.7e-10 69.3 243 35.8
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 8.1e-10 68.6 275 28.0
FAN02G3820 Fragaria x ananassa HOM05D005871 ORTHO05D003654 8.1e-10 68.6 240 27.9
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 8.1e-10 68.6 209 29.2
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 8.1e-10 68.6 254 28.0
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 8.1e-10 68.6 246 28.9
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 1.1e-09 68.2 237 30.0
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 1.1e-09 68.2 238 34.5
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 1.1e-09 68.2 237 30.0
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 1.1e-09 68.2 237 30.0
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.4e-09 67.8 258 29.5
Medtr5g095540 Medicago truncatula HOM05D005871 ORTHO05D003654 1.4e-09 67.8 263 36.5
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 1.4e-09 67.8 256 25.8
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 1.8e-09 67.4 237 28.3
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 1.8e-09 67.4 263 27.0
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 3.1e-09 66.6 248 28.6
CAN.G337.14 Capsicum annuum HOM05D033747 ORTHO05D033984 3.1e-09 66.6 256 36.3
Psat0s4683g0040 Pisum sativum HOM05D005871 ORTHO05D003654 3.1e-09 66.6 255 28.2
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 3.1e-09 66.6 250 29.6
Ciclev10016749m.g Citrus clementina HOM05D008806 ORTHO05D003654 6.8e-09 65.5 253 28.5
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 8.9e-09 65.1 237 35.4
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 8.9e-09 65.1 255 38.8
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 8.9e-09 65.1 205 31.7
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 1.2e-08 64.7 251 27.1
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 1.2e-08 64.7 237 27.0
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 1.2e-08 64.7 263 30.0
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 1.2e-08 64.7 266 39.5
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 1.5e-08 64.3 253 35.6
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 1.5e-08 64.3 286 25.9
Atru.chr2.3672 Acer truncatum HOM05D005871 ORTHO05D003654 3.4e-08 63.2 276 43.1
Glyma.09G012800 Glycine max HOM05D005871 ORTHO05D003654 3.4e-08 63.2 268 37.3
Thecc.06G238200 Theobroma cacao HOM05D005871 ORTHO05D003654 3.4e-08 63.2 246 34.1
QL06p003419 Quercus lobata HOM05D008806 ORTHO05D003654 4.4e-08 62.8 242 27.7
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.8e-08 62.4 258 28.7
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 5.8e-08 62.4 250 37.2
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 7.6e-08 62.0 256 28.1
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 9.9e-08 61.6 244 30.7
EL10Ac4g07598 Beta vulgaris HOM05D001421 ORTHO05D001245 1.3e-07 61.2 36 83.3
Atru.chr6.3383_Atru.chr6.3384 Acer truncatum HOM05D008806 ORTHO05D003654 2.2e-07 60.5 240 27.5
CANSAT11G0434 Cannabis sativa HOM05D005871 ORTHO05D003654 1.1e-06 58.2 37 75.7
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.1e-06 58.2 201 26.4
arahy.Tifrunner.gnm1.ann1.56XTAU Arachis hypogaea HOM05D005871 ORTHO05D003654 1.4e-06 57.8 33 81.8
arahy.Tifrunner.gnm1.ann1.C2C6BR Arachis hypogaea HOM05D005871 ORTHO05D003654 1.4e-06 57.8 33 81.8
FvH4_6g40700 Fragaria vesca HOM05D008806 ORTHO05D003654 1.4e-06 57.8 240 26.2
FAN05G0544 Fragaria x ananassa HOM05D008806 ORTHO05D003654 2.4e-06 57.0 208 26.9
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 2.4e-06 57.0 255 25.1
Aqoxy1G04240 Aquilegia oxysepala HOM05D005871 ORTHO05D003654 3.2e-06 56.6 33 78.8
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 4.1e-06 56.2 260 26.9
CiPaw.03G281200 Carya illinoinensis HOM05D005871 ORTHO05D003654 5.4e-06 55.8 243 32.9
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 5.4e-06 55.8 249 28.9
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 7.1e-06 55.5 244 32.8
MD00G1057200 Malus domestica HOM05D005871 ORTHO05D003654 7.1e-06 55.5 212 28.3
Psat2g008040 Pisum sativum HOM05D005871 ORTHO05D003654 7.1e-06 55.5 243 33.3
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 9.2e-06 55.1 235 30.6
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 9.2e-06 55.1 255 27.8


User provided reference genes

Program Settings