Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 1.1e-92 343.6 210 100.0
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 7.1e-28 128.3 148 54.1
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.1e-25 120.9 145 48.3
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 7.4e-25 118.2 149 51.7
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 7.4e-25 118.2 149 51.7
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 8.2e-24 114.8 154 46.1
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 4.1e-23 112.5 145 44.8
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 9.0e-23 111.3 141 48.9
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 3.4e-22 109.4 130 48.5
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 4.5e-22 109.0 149 45.0
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 5.9e-22 108.6 151 43.0
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 6.5e-21 105.1 131 46.6
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 8.5e-21 104.8 163 39.9
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 8.5e-21 104.8 148 45.3
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.1e-20 104.4 138 42.8
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 1.4e-20 104.0 129 46.5
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 1.9e-20 103.6 140 46.4
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 5.5e-20 102.1 137 44.5
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 5.5e-20 102.1 142 43.7
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 5.5e-20 102.1 145 46.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 7.2e-20 101.7 139 43.9
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 2.1e-19 100.1 136 42.6
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 7.9e-19 98.2 136 41.2
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 7.9e-19 98.2 130 46.2
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 7.9e-19 98.2 143 45.5
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.0e-18 97.8 156 42.9
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.0e-18 97.8 129 47.3
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.0e-18 97.8 129 47.3
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 2.3e-18 96.7 136 39.7
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 2.3e-18 96.7 139 43.9
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 3.0e-18 96.3 150 41.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 5.1e-18 95.5 151 43.0
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 6.7e-18 95.1 132 43.9
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 8.8e-18 94.7 150 40.7
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 8.8e-18 94.7 149 42.3
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.5e-17 94.0 144 41.0
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 2.0e-17 93.6 128 41.4
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.0e-17 93.6 148 40.5
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 4.3e-17 92.4 140 43.6
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 5.7e-17 92.0 155 40.0
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 7.4e-17 91.7 120 46.7
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 9.7e-17 91.3 136 43.4
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 1.3e-16 90.9 169 36.7
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.7e-16 90.5 132 41.7
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.7e-16 90.5 136 39.0
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 2.2e-16 90.1 120 46.7
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 2.2e-16 90.1 135 42.2
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 2.8e-16 89.7 131 38.9
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 4.8e-16 89.0 145 37.2
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 4.8e-16 89.0 139 39.6
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 8.2e-16 88.2 143 40.6
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 1.1e-15 87.8 152 39.5
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.1e-15 87.8 119 42.0
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.4e-15 87.4 161 34.8
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.4e-15 87.4 130 40.8
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.8e-15 87.0 135 36.3
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.4e-15 86.7 126 42.1
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.4e-15 86.7 163 36.8
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.1e-15 86.3 141 40.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 3.1e-15 86.3 180 34.4
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 3.1e-15 86.3 146 39.0
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 4.1e-15 85.9 64 62.5
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 5.3e-15 85.5 138 37.7
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 6.9e-15 85.1 150 37.3
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 9.1e-15 84.7 115 47.0
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 9.1e-15 84.7 141 38.3
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.2e-14 84.3 133 40.6
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 2.0e-14 83.6 149 35.6
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.0e-14 83.6 162 32.7
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.0e-14 83.6 165 36.4
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 3.4e-14 82.8 127 40.9
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 3.4e-14 82.8 138 39.9
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 3.4e-14 82.8 146 39.7
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 4.5e-14 82.4 163 35.6
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.0e-13 81.3 139 40.3
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.3e-13 80.9 126 43.7
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 1.7e-13 80.5 163 37.4
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.7e-13 80.5 163 33.1
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 1.7e-13 80.5 169 33.1
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 2.9e-13 79.7 135 40.0
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 3.8e-13 79.3 152 40.1
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 3.8e-13 79.3 152 40.1
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 3.8e-13 79.3 117 41.0
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 5.0e-13 79.0 152 40.1
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 5.0e-13 79.0 163 36.8
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 8.5e-13 78.2 136 39.0
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 8.5e-13 78.2 157 36.9
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 1.4e-12 77.4 144 35.4
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.9e-12 77.0 154 38.3
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.9e-12 77.0 154 38.3
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.9e-12 77.0 118 37.3
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 1.9e-12 77.0 148 37.8
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 2.5e-12 76.6 138 39.9
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 3.2e-12 76.3 58 56.9
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 3.2e-12 76.3 125 36.0
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 5.5e-12 75.5 158 32.9
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.6e-11 73.9 161 33.5
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.6e-11 73.9 139 38.8
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.1e-11 73.6 138 37.0
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 2.1e-11 73.6 54 55.6
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.6e-11 72.8 173 32.4
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 4.7e-11 72.4 173 31.8
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 4.7e-11 72.4 127 37.0
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 4.7e-11 72.4 174 32.2
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 7.9e-11 71.6 155 36.1
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 7.9e-11 71.6 125 36.8
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 2.3e-10 70.1 147 32.7
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 2.3e-10 70.1 127 38.6
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.0e-10 69.7 156 32.7
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.0e-10 69.7 174 31.6
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 3.9e-10 69.3 89 47.2
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 3.9e-10 69.3 152 37.5
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.9e-10 69.3 161 32.3
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 6.7e-10 68.6 174 32.8
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 2.6e-09 66.6 49 61.2
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 4.4e-09 65.9 134 32.8
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 5.7e-09 65.5 173 33.5
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 9.7e-09 64.7 115 35.7
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.7e-08 63.9 73 49.3
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.7e-08 63.9 119 33.6
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 3.7e-08 62.8 162 31.5
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 4.8e-08 62.4 50 56.0
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 1.1e-07 61.2 73 47.9
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 1.1e-07 61.2 73 47.9
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 4.1e-07 59.3 112 37.5
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 9.1e-07 58.2 177 27.7
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 1.5e-06 57.4 135 28.9


User provided reference genes

Program Settings