Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.9e-139 499.2 262 100.0
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 2.5e-91 339.3 256 73.0
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 6.9e-89 331.3 245 71.8
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.9e-89 331.3 234 76.5
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 8.5e-87 324.3 232 75.9
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 8.8e-84 314.3 255 68.2
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 2.6e-83 312.8 267 67.4
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 5.7e-83 311.6 268 65.3
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 7.4e-83 311.2 197 82.2
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 9.7e-83 310.8 259 68.0
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.7e-82 310.1 237 72.2
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.8e-82 309.3 248 69.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.7e-82 308.9 249 68.3
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.7e-82 308.9 262 66.4
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.7e-82 308.9 251 66.9
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 4.8e-82 308.5 228 74.6
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 6.3e-82 308.1 199 78.9
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 6.3e-82 308.1 200 80.5
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 8.2e-82 307.8 257 67.3
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 8.2e-82 307.8 251 66.5
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 8.2e-82 307.8 256 68.4
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.1e-81 307.4 199 77.9
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.4e-81 307.0 214 76.2
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.8e-81 306.6 222 74.3
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.8e-81 306.6 246 68.7
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.8e-81 306.6 259 65.3
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.4e-81 306.2 242 69.0
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 4.1e-81 305.4 234 71.8
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.3e-81 305.1 248 69.0
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 7.0e-81 304.7 249 67.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 7.0e-81 304.7 199 79.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 9.1e-81 304.3 226 72.1
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 9.1e-81 304.3 197 77.7
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 9.1e-81 304.3 220 74.5
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 9.1e-81 304.3 199 79.4
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.2e-80 303.9 249 68.3
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.2e-80 303.9 253 66.4
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.5e-80 303.5 252 68.3
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.5e-80 303.5 253 68.4
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.0e-80 303.1 197 79.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.0e-80 303.1 254 66.9
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.6e-80 302.8 249 68.7
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 2.6e-80 302.8 218 73.4
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 2.6e-80 302.8 248 68.1
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.5e-80 302.4 246 66.7
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 4.5e-80 302.0 228 70.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.5e-80 302.0 195 80.5
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.5e-80 302.0 236 69.1
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 7.7e-80 301.2 239 70.3
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 7.7e-80 301.2 225 71.6
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.8e-79 298.9 236 67.8
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 5.0e-79 298.5 250 66.8
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 6.5e-79 298.1 251 66.9
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 8.5e-79 297.7 200 78.0
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 8.5e-79 297.7 197 78.2
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.4e-78 297.0 253 68.0
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.9e-78 296.6 251 66.5
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 2.5e-78 296.2 230 70.4
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 3.2e-78 295.8 243 66.7
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 3.2e-78 295.8 271 62.4
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 3.2e-78 295.8 257 66.1
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 3.2e-78 295.8 238 67.6
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.2e-78 295.8 258 63.6
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 4.2e-78 295.4 192 79.7
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 4.2e-78 295.4 252 64.7
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 4.2e-78 295.4 245 69.0
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 4.2e-78 295.4 250 67.2
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 5.5e-78 295.0 199 76.9
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.2e-77 293.9 239 68.6
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.2e-77 293.9 250 66.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.6e-77 293.5 264 63.6
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.1e-77 293.1 199 76.9
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 4.7e-77 292.0 236 66.1
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.7e-77 292.0 195 74.4
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.0e-76 290.8 260 65.0
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.8e-76 290.0 193 77.2
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 2.3e-76 289.7 264 62.5
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 5.2e-76 288.5 197 78.2
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 8.8e-76 287.7 197 76.6
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.5e-75 287.0 197 76.1
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.5e-75 287.0 225 66.7
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 2.0e-75 286.6 238 67.2
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 2.6e-75 286.2 197 76.1
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.3e-75 285.8 219 71.2
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 5.7e-75 285.0 258 62.0
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 7.4e-75 284.6 178 84.3
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.3e-74 283.9 194 75.8
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.3e-74 283.9 203 74.9
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.3e-74 283.9 203 74.9
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.2e-74 283.1 250 63.6
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 3.7e-74 282.3 226 69.9
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 4.8e-74 282.0 248 62.9
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 8.2e-74 281.2 194 76.3
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 8.2e-74 281.2 194 75.3
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.1e-73 280.8 248 62.5
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.8e-73 280.0 194 75.8
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 5.3e-73 278.5 197 73.1
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 5.3e-73 278.5 248 62.1
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 5.9e-72 275.0 194 73.7
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 2.2e-71 273.1 315 54.0
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 8.5e-71 271.2 316 52.8
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.1e-70 270.8 234 66.2
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.5e-70 270.4 194 72.7
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.9e-70 270.0 258 59.7
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.6e-69 266.9 193 67.4
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 4.7e-69 265.4 198 71.2
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 4.0e-60 235.7 196 60.2
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.5e-59 233.8 208 63.5
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 4.4e-59 232.3 208 59.1
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 9.8e-59 231.1 209 61.2
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 3.1e-57 226.1 193 60.1
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 4.1e-57 225.7 190 63.7
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 4.5e-56 222.2 228 55.7
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.7e-55 220.3 191 61.3
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 6.6e-55 218.4 202 64.4
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 7.2e-54 214.9 188 55.9
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.8e-50 203.0 146 71.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 6.3e-50 201.8 156 64.7
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 9.2e-49 198.0 119 86.6
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.5e-46 190.7 181 56.9
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 1.0e-44 184.5 205 52.7
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.2e-43 181.0 181 55.8
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 7.1e-33 145.2 226 38.9
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.7e-26 124.0 87 77.0
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.1e-21 107.1 209 35.9
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.2e-16 91.3 122 44.3
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.0e-15 88.2 80 56.2
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 5.6e-14 82.4 70 57.1
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 1.5e-11 74.3 57 64.9
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 2.0e-11 73.9 53 69.8
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.6e-08 64.3 48 60.4
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 7.8e-08 62.0 42 69.0
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.0e-07 61.6 87 47.1
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 2.3e-07 60.5 40 67.5
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 2.3e-07 60.5 94 39.4


User provided reference genes

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