Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 7.6e-52 206.8 101 100.0
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 2.4e-21 105.5 97 56.7
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.1e-18 96.7 94 52.1
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.0e-16 90.1 101 50.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 2.3e-16 89.0 82 58.5
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.5e-15 86.3 100 49.0
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.5e-15 86.3 100 53.0
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.5e-15 86.3 104 50.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.6e-15 85.5 104 49.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 3.3e-15 85.1 83 54.2
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.4e-15 84.7 81 55.6
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.4e-15 84.7 95 50.5
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.7e-15 83.6 84 54.8
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 9.7e-15 83.6 80 48.8
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.3e-14 83.2 87 51.7
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-14 83.2 104 49.0
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.3e-14 83.2 92 45.7
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.7e-14 82.8 99 45.5
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.8e-14 82.0 94 47.9
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.8e-14 82.0 86 45.3
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 3.7e-14 81.6 77 49.4
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 4.8e-14 81.3 95 48.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 4.8e-14 81.3 96 44.8
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.3e-14 80.9 95 49.5
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.4e-13 79.7 81 43.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.4e-13 79.7 93 47.3
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.8e-13 79.3 79 48.1
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-13 79.3 80 46.2
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-13 79.3 80 46.2
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 2.4e-13 79.0 100 43.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.4e-13 79.0 99 48.5
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.4e-13 79.0 99 48.5
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.4e-13 79.0 80 46.2
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.1e-13 78.6 92 45.7
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 3.1e-13 78.6 98 42.9
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.1e-13 78.2 94 46.8
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 5.3e-13 77.8 88 39.8
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 7.0e-13 77.4 85 51.8
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 7.0e-13 77.4 101 42.6
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.2e-12 76.6 84 46.4
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.2e-12 76.6 80 52.5
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.2e-12 76.6 82 50.0
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.6e-12 76.3 74 52.7
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.6e-12 76.3 92 46.7
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.6e-12 76.3 72 51.4
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.6e-12 76.3 99 45.5
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.6e-12 76.3 99 44.4
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-12 75.9 94 51.1
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.0e-12 75.9 88 43.2
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.0e-12 75.9 87 44.8
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.0e-12 75.9 81 54.3
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.0e-12 75.9 84 47.6
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 2.6e-12 75.5 85 49.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.5e-12 75.1 87 44.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.5e-12 75.1 77 44.2
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.5e-12 75.1 97 40.2
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 4.5e-12 74.7 87 44.8
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.5e-12 74.7 97 42.3
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 4.5e-12 74.7 59 61.0
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 5.9e-12 74.3 93 40.9
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 5.9e-12 74.3 57 61.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 7.7e-12 73.9 92 42.4
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 7.7e-12 73.9 79 45.6
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 7.7e-12 73.9 100 42.0
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 7.7e-12 73.9 86 45.3
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.0e-11 73.6 91 44.0
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.0e-11 73.6 88 47.7
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.0e-11 73.6 82 47.6
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-11 73.2 79 46.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.7e-11 72.8 58 58.6
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 2.2e-11 72.4 106 41.5
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.2e-11 72.4 66 57.6
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.2e-11 72.4 84 48.8
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.9e-11 72.0 81 49.4
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.9e-11 72.0 85 47.1
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 2.9e-11 72.0 80 45.0
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.9e-11 72.0 73 47.9
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.9e-11 72.0 81 46.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.9e-11 72.0 110 44.5
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.9e-11 72.0 91 44.0
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 3.8e-11 71.6 96 47.9
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.8e-11 71.6 79 48.1
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 3.8e-11 71.6 89 43.8
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.0e-11 71.2 75 49.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 6.5e-11 70.9 98 38.8
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 8.5e-11 70.5 78 42.3
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.5e-11 70.5 111 41.4
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 8.5e-11 70.5 91 39.6
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.1e-10 70.1 94 42.6
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.5e-10 69.7 77 42.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-10 69.7 69 46.4
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.9e-10 69.3 75 48.0
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.5e-10 68.9 79 46.8
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.2e-10 68.6 81 50.6
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 5.5e-10 67.8 78 46.2
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 7.2e-10 67.4 81 44.4
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 7.2e-10 67.4 81 44.4
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 9.4e-10 67.0 99 36.4
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-09 66.6 54 57.4
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.2e-09 66.6 86 39.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.2e-09 66.6 108 43.5
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.6e-09 66.2 77 50.6
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.6e-09 66.2 70 51.4
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.1e-09 65.9 98 40.8
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.1e-09 65.9 88 40.9
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 2.1e-09 65.9 108 43.5
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.7e-09 65.5 70 48.6
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.7e-09 65.5 52 63.5
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 3.6e-09 65.1 77 45.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.6e-09 65.1 49 65.3
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.6e-09 65.1 90 44.4
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 4.7e-09 64.7 77 45.5
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 6.1e-09 64.3 84 40.5
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 6.1e-09 64.3 65 50.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 6.1e-09 64.3 84 44.0
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 6.1e-09 64.3 65 52.3
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 6.1e-09 64.3 88 44.3
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 6.1e-09 64.3 90 37.8
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.4e-08 63.2 96 37.5
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.4e-08 63.2 83 37.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.8e-08 62.8 64 51.6
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.8e-08 62.8 52 59.6
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.8e-08 62.8 102 34.3
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.3e-08 62.4 46 67.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.3e-08 62.4 60 51.7
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.2e-08 61.2 111 36.0
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.2e-08 61.2 67 47.8
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.8e-08 60.5 101 42.6
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.1e-07 60.1 107 36.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.3e-07 58.5 64 48.4
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 4.4e-07 58.2 75 45.3
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 5.7e-07 57.8 71 40.8
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 5.7e-07 57.8 91 34.1
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.7e-07 57.8 67 46.3
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 9.7e-07 57.0 48 52.1
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-06 56.6 107 37.4
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.3e-06 56.6 54 42.6
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 2.8e-06 55.5 73 38.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 3.7e-06 55.1 71 39.4
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 3.7e-06 55.1 71 39.4
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 4.8e-06 54.7 96 35.4
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 4.8e-06 54.7 94 33.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 8.2e-06 53.9 97 29.9


User provided reference genes

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