Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 6.2e-179 630.9 386 100.0
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.4e-45 187.2 389 38.8
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 3.2e-34 150.2 275 42.9
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 3.6e-33 146.7 373 34.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 3.6e-33 146.7 411 29.2
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 6.1e-33 146.0 372 32.3
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 3.3e-31 140.2 301 34.2
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 9.7e-31 138.7 427 32.1
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.8e-30 137.1 308 34.1
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.4e-29 134.8 295 30.8
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.4e-29 134.0 343 32.1
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.6e-28 131.3 279 31.5
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 2.0e-28 131.0 288 30.9
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.6e-28 130.6 337 36.5
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 7.7e-28 129.0 314 29.9
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.3e-27 128.3 274 36.9
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 8.5e-27 125.6 346 34.1
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.5e-26 124.8 332 36.4
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.9e-26 124.4 294 38.8
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.2e-26 123.6 232 35.8
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 4.2e-26 123.2 411 32.4
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 4.2e-26 123.2 413 28.6
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 7.2e-26 122.5 336 32.7
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 2.1e-25 120.9 374 36.9
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.7e-25 120.6 248 36.7
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.7e-25 120.6 387 32.6
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 2.7e-25 120.6 305 34.8
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.4e-24 118.2 82 64.6
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.4e-24 118.2 446 32.1
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.8e-24 117.9 312 33.3
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.8e-24 117.9 263 32.3
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 2.3e-24 117.5 420 31.0
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 3.0e-24 117.1 306 28.8
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 3.0e-24 117.1 248 37.9
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 4.0e-24 116.7 282 36.9
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.0e-24 116.7 389 30.3
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 4.0e-24 116.7 389 30.3
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 5.2e-24 116.3 173 41.0
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 8.8e-24 115.5 122 49.2
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 1.2e-23 115.2 187 39.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.2e-23 115.2 285 35.4
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.2e-23 115.2 319 34.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.2e-23 115.2 112 48.2
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.0e-23 114.4 370 35.7
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 2.0e-23 114.4 324 28.7
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.6e-23 114.0 272 29.0
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.6e-23 114.0 407 27.0
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 2.6e-23 114.0 248 36.3
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 3.3e-23 113.6 310 33.2
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 3.3e-23 113.6 291 38.5
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 4.4e-23 113.2 414 32.1
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 5.7e-23 112.8 161 42.2
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 7.5e-23 112.5 136 44.9
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 7.5e-23 112.5 356 32.3
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 9.7e-23 112.1 358 25.4
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 9.7e-23 112.1 342 31.9
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 9.7e-23 112.1 322 31.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.3e-22 111.7 296 27.4
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.3e-22 111.7 104 51.0
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.2e-22 110.9 331 32.9
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.8e-22 110.5 324 31.5
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.8e-22 110.5 298 29.9
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 3.7e-22 110.2 301 27.2
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 4.8e-22 109.8 298 26.8
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 4.8e-22 109.8 298 26.8
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 4.8e-22 109.8 302 32.8
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 4.8e-22 109.8 112 48.2
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.8e-22 109.8 89 56.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 4.8e-22 109.8 379 35.1
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 6.3e-22 109.4 123 43.9
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 8.2e-22 109.0 146 43.2
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 8.2e-22 109.0 158 38.6
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 8.2e-22 109.0 119 45.4
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.1e-21 108.6 298 30.9
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.1e-21 108.6 246 32.1
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.1e-21 108.6 90 51.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.4e-21 108.2 288 30.6
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.4e-21 108.2 269 29.4
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.4e-21 108.2 281 30.2
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.4e-21 108.2 102 49.0
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.8e-21 107.8 363 28.9
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 4.1e-21 106.7 110 47.3
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 7.0e-21 105.9 406 29.3
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 7.0e-21 105.9 223 38.1
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 9.1e-21 105.5 228 33.3
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 9.1e-21 105.5 112 45.5
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 9.1e-21 105.5 102 48.0
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-20 105.1 244 30.7
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.0e-20 104.4 366 30.6
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 2.7e-20 104.0 406 26.4
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.7e-20 104.0 158 37.3
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 3.5e-20 103.6 112 42.0
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 3.5e-20 103.6 91 51.6
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.5e-20 103.2 122 42.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 4.5e-20 103.2 257 29.6
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.0e-19 102.1 95 48.4
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.0e-19 102.1 284 35.2
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.3e-19 101.7 411 26.5
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.2e-19 100.9 177 35.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.9e-19 100.5 226 30.1
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.8e-19 100.1 274 29.9
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 6.5e-19 99.4 90 46.7
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 1.1e-18 98.6 88 47.7
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.5e-18 98.2 259 28.2
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.5e-18 97.4 345 34.5
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.2e-18 97.1 94 48.9
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.2e-18 97.1 126 42.1
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 7.2e-18 95.9 334 34.4
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 9.4e-18 95.5 178 36.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 3.6e-17 93.6 273 35.2
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.4e-16 91.7 144 36.1
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.8e-16 89.4 289 30.8
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.6e-15 87.4 71 57.7
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.7e-14 84.7 110 40.0
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.0e-12 77.8 127 35.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 7.7e-12 75.9 83 38.6
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.3e-11 75.1 139 33.1
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 1.9e-10 71.2 127 39.4
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 7.2e-10 69.3 78 47.4
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.6e-09 67.0 114 28.9
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.0e-08 63.9 44 56.8
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 6.8e-08 62.8 75 38.7
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 8.3e-06 55.8 49 44.9


User provided reference genes

Program Settings