Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 8.4e-138 493.8 272 100.0
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 3.6e-72 275.8 274 60.2
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 4.0e-71 272.3 278 60.4
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 4.4e-70 268.9 287 56.8
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 2.2e-69 266.5 231 64.1
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.4e-68 263.8 284 59.2
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.8e-68 263.5 278 59.7
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 3.1e-68 262.7 270 60.0
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 3.1e-68 262.7 267 58.1
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 7.0e-68 261.5 243 60.9
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 9.2e-68 261.2 282 59.2
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.6e-67 260.4 285 57.9
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 3.5e-67 259.2 274 58.4
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 2.9e-66 256.1 270 57.8
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 6.6e-66 255.0 272 57.7
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 6.6e-66 255.0 278 56.5
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.9e-65 253.4 291 54.3
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.9e-65 253.4 271 56.5
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 9.5e-65 251.1 284 56.3
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 1.2e-64 250.8 266 58.3
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.6e-64 250.4 272 57.0
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.6e-64 249.2 281 56.2
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 6.1e-64 248.4 251 57.0
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.4e-63 247.3 270 57.4
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.8e-63 246.9 281 54.1
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 2.3e-63 246.5 280 55.4
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.0e-63 246.1 276 55.8
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 6.8e-63 245.0 278 55.0
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.2e-62 244.2 217 62.2
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 3.4e-62 242.7 211 63.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 4.4e-62 242.3 281 55.2
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 7.5e-62 241.5 208 64.4
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 7.5e-62 241.5 250 56.4
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 7.5e-62 241.5 217 61.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.3e-61 240.7 218 61.5
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 2.9e-61 239.6 253 56.1
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.7e-61 239.2 285 56.1
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 3.7e-61 239.2 269 54.3
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 3.7e-61 239.2 281 54.8
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 8.3e-61 238.0 268 55.2
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 8.3e-61 238.0 325 47.7
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.1e-60 237.7 263 54.0
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.4e-60 236.5 253 55.3
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 4.1e-60 235.7 285 54.7
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 9.2e-60 234.6 238 55.5
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.2e-60 234.6 283 55.5
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 9.2e-60 234.6 283 55.5
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.2e-59 234.2 269 55.0
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.2e-59 234.2 287 54.7
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.2e-59 234.2 274 52.6
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.6e-59 233.8 230 59.1
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 4.6e-59 232.3 290 51.4
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 5.9e-59 231.9 209 63.6
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.3e-58 230.7 280 52.9
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.7e-58 230.3 271 52.8
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 3.0e-58 229.6 275 53.5
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 5.0e-58 228.8 280 53.6
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 6.6e-58 228.4 260 55.0
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 8.6e-58 228.0 198 64.1
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.5e-57 227.3 289 51.2
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.5e-57 227.3 252 54.0
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.5e-57 227.3 274 53.6
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.5e-57 227.3 272 51.8
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.3e-57 226.1 260 54.6
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 4.3e-57 225.7 270 51.5
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 5.6e-57 225.3 280 51.4
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 7.3e-57 224.9 260 54.2
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.2e-56 224.2 288 51.0
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.2e-56 224.2 257 53.3
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.2e-56 224.2 276 51.4
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 1.2e-56 224.2 255 54.5
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 2.1e-56 223.4 280 52.5
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 2.1e-56 223.4 260 53.5
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 2.1e-56 223.4 260 53.5
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 2.1e-56 223.4 260 53.5
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 4.7e-56 222.2 271 52.0
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 1.0e-55 221.1 252 55.2
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 6.8e-55 218.4 213 57.3
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.2e-54 217.6 272 54.0
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 2.6e-54 216.5 256 52.7
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.4e-54 216.1 250 53.2
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.7e-53 213.8 190 60.0
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.1e-52 211.1 262 51.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.4e-52 209.9 268 48.9
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.4e-52 209.9 268 48.9
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.4e-52 209.9 278 49.3
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 4.1e-52 209.1 257 50.2
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 7.0e-52 208.4 194 62.4
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 4.6e-51 205.7 264 51.9
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.7e-50 203.8 279 48.4
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 6.6e-50 201.8 225 56.9
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 3.3e-49 199.5 269 47.6
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 3.3e-49 199.5 269 47.6
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 8.1e-48 194.9 202 56.9
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.1e-47 194.5 278 50.0
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.4e-47 194.1 258 48.8
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.3e-45 187.6 205 57.6
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.9e-44 183.7 266 47.4
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.2e-40 171.0 183 55.2
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 8.1e-40 168.3 211 51.2
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.8e-39 167.2 212 51.9
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.5e-38 164.1 255 43.5
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.6e-38 163.3 252 44.0
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 4.4e-38 162.5 150 60.0
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 3.2e-36 156.4 258 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.3e-34 151.0 180 48.9
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.5e-33 147.5 199 47.7
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 2.5e-33 146.7 211 48.8
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 5.6e-33 145.6 206 45.6
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.2e-32 144.4 190 48.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.1e-32 143.7 213 44.1
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.2e-30 137.9 142 59.2
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 7.1e-28 128.6 128 56.2
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 1.0e-26 124.8 166 48.8
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 1.0e-26 124.8 166 48.8
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 2.5e-25 120.2 125 52.0
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 4.8e-24 115.9 195 42.1
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 1.1e-23 114.8 229 38.9
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 9.0e-23 111.7 126 51.6
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.2e-22 111.3 157 45.2
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 6.4e-21 105.5 164 39.0
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 6.0e-19 99.0 128 50.8
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 8.7e-18 95.1 178 41.0
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.1e-17 94.7 128 46.9
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.5e-17 94.4 74 67.6
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 4.8e-16 89.4 71 67.6
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 4.8e-16 89.4 230 35.2
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 1.7e-13 80.9 106 49.1
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 1.2e-11 74.7 171 30.4
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 7.9e-11 72.0 138 38.4
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 6.7e-10 68.9 60 58.3
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 8.1e-08 62.0 44 63.6
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 8.1e-08 62.0 181 32.0
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 4.0e-07 59.7 79 46.8
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.0e-05 55.1 42 64.3


User provided reference genes

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