Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 5.7e-292 1006.9 526 100.0
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 6.5e-187 657.9 527 65.5
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 1.1e-186 657.1 514 66.3
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 7.4e-183 644.4 527 64.5
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 4.8e-182 641.7 527 63.8
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 1.8e-181 639.8 527 62.6
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 3.5e-180 635.6 527 62.4
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 1.0e-179 634.0 527 62.8
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.3e-179 633.6 527 62.2
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 2.9e-179 632.5 527 62.2
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 5.0e-179 631.7 527 62.2
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 2.7e-177 625.9 527 62.6
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 2.7e-177 625.9 527 62.8
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 2.3e-176 622.9 527 62.4
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 3.0e-176 622.5 526 62.9
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.1e-175 620.5 527 62.2
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 2.0e-175 619.8 527 59.4
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 2.8e-174 615.9 519 62.8
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 4.8e-174 615.1 542 60.9
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 6.3e-174 614.8 527 58.8
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.4e-173 613.6 527 62.2
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 5.3e-173 611.7 527 60.2
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 7.0e-173 611.3 527 60.9
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 1.6e-172 610.1 521 61.0
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 2.0e-172 609.8 527 62.0
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 3.5e-172 609.0 528 61.6
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 4.5e-172 608.6 541 57.9
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 2.2e-171 606.3 519 61.3
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 8.5e-171 604.4 551 59.2
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 2.5e-170 602.8 528 60.8
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 4.2e-170 602.1 530 60.6
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 4.2e-170 602.1 551 59.0
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 1.6e-169 600.1 498 62.4
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 2.7e-169 599.4 518 60.6
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 3.6e-169 599.0 527 60.5
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 6.1e-169 598.2 539 60.7
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 1.2e-167 594.0 528 60.4
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 1.5e-167 593.6 528 60.0
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 1.5e-167 593.6 516 58.1
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 2.6e-167 592.8 530 59.6
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 5.7e-167 591.7 516 61.4
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 1.3e-166 590.5 512 60.7
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 2.2e-166 589.7 527 60.5
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 8.3e-166 587.8 531 59.3
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 8.3e-166 587.8 531 59.3
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.4e-165 587.0 527 58.3
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 3.1e-165 585.9 527 58.3
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 4.1e-165 585.5 527 59.2
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 1.2e-164 583.9 516 58.5
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 1.6e-164 583.6 520 59.4
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 1.7e-163 580.1 564 56.6
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 3.8e-163 578.9 527 58.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 8.5e-163 577.8 574 55.6
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 3.2e-162 575.9 516 58.3
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 9.4e-162 574.3 516 57.6
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 2.7e-161 572.8 529 58.2
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 3.6e-161 572.4 527 58.4
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 6.1e-161 571.6 541 57.9
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 8.8e-160 567.8 528 56.6
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 2.6e-159 566.2 527 59.0
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 3.4e-159 565.8 632 51.7
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 1.7e-158 563.5 527 58.4
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 1.7e-158 563.5 527 58.6
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 2.8e-158 562.8 528 57.6
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 4.5e-156 555.4 466 63.1
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 5.0e-155 552.0 527 56.9
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 4.2e-154 548.9 521 55.5
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 1.0e-152 544.3 521 54.3
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.8e-152 543.5 521 54.3
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 2.0e-151 540.0 521 54.3
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 2.4e-149 533.1 524 54.2
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 2.9e-147 526.2 521 53.0
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 5.0e-147 525.4 521 52.8
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 4.0e-144 515.8 547 50.6
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 4.4e-143 512.3 532 51.1
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 1.3e-142 510.8 516 53.1
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 1.7e-142 510.4 548 50.4
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 7.0e-141 505.0 474 57.6
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 1.6e-140 503.8 513 53.0
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 2.7e-140 503.1 575 51.1
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 6.0e-140 501.9 527 52.4
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 2.3e-139 500.0 526 53.6
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 5.6e-138 495.4 521 51.1
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 1.2e-137 494.2 412 65.3
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 1.9e-133 480.3 447 57.7
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 2.5e-130 469.9 418 59.1
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 3.3e-130 469.5 523 46.8
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 2.3e-128 463.4 528 46.6
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 2.0e-127 460.3 451 55.7
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 2.4e-125 453.4 389 61.7
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 2.4e-120 436.8 547 48.1
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 5.8e-119 432.2 517 49.1
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 6.4e-110 402.1 413 54.7
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 1.3e-94 351.3 330 57.6
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 3.3e-90 336.7 319 55.8
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.0e-86 325.1 290 58.6
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.0e-86 325.1 290 58.6
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 1.1e-82 311.6 526 36.5
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 9.7e-82 308.5 515 37.5
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 6.5e-78 295.8 394 46.4
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 6.1e-76 289.3 514 36.2
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 1.4e-75 288.1 375 46.9
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 1.9e-69 267.7 241 60.6
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 8.2e-65 252.3 199 62.8
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 2.9e-62 243.8 234 56.8
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 1.8e-56 224.6 286 50.3
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 2.2e-54 217.6 171 63.7
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 9.4e-53 212.2 229 49.3
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 9.4e-53 212.2 162 63.6
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 1.1e-48 198.7 452 32.1
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 2.4e-48 197.6 173 56.1
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 6.4e-33 146.4 106 67.0
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 5.4e-32 143.3 113 60.2
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 4.6e-31 140.2 290 32.8
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 3.6e-28 130.6 124 51.6
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 1.2e-18 99.0 101 52.5
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 7.8e-15 86.3 143 36.4
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-13 82.0 77 50.6
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 7.3e-13 79.7 91 45.1
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 7.1e-08 63.2 64 54.7


User provided reference genes

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