Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 2.3e-118 429.1 251 100.0
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.7e-20 104.0 230 36.1
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 1.7e-20 104.0 215 40.5
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 5.0e-20 102.4 223 41.7
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 2.5e-19 100.1 200 40.5
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 5.6e-19 99.0 196 38.8
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.6e-19 99.0 221 38.9
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 5.6e-19 99.0 221 38.9
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 7.3e-19 98.6 222 36.9
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 9.5e-19 98.2 223 40.4
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 2.1e-18 97.1 220 38.6
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 3.6e-18 96.3 216 36.1
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 3.6e-18 96.3 235 34.9
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 8.9e-17 91.7 262 34.7
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 8.9e-17 91.7 213 31.9
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 2.6e-16 90.1 272 32.7
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 2.6e-16 90.1 220 32.7
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 2.6e-16 90.1 233 30.5
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 7.5e-16 88.6 254 37.4
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 1.7e-15 87.4 222 38.7
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 2.2e-15 87.0 201 42.8
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 3.7e-15 86.3 236 37.3
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 8.3e-15 85.1 232 32.3
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 8.3e-15 85.1 250 38.8
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 1.1e-14 84.7 250 39.2
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.4e-14 84.3 239 31.8
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 1.4e-14 84.3 224 36.6
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 1.8e-14 84.0 238 36.6
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 2.4e-14 83.6 244 32.8
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 3.2e-14 83.2 227 38.8
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 7.0e-14 82.0 253 33.6
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 1.2e-13 81.3 221 36.2
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 1.2e-13 81.3 257 30.0
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 2.0e-13 80.5 226 41.6
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 2.7e-13 80.1 223 37.2
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 4.6e-13 79.3 224 29.9
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 5.9e-13 79.0 238 40.8
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 1.3e-12 77.8 243 31.3
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 2.3e-12 77.0 211 31.8
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 2.3e-12 77.0 225 28.4
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 3.0e-12 76.6 211 31.8
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 5.0e-12 75.9 204 34.3
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 5.0e-12 75.9 226 33.2
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 5.0e-12 75.9 226 37.6
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 1.1e-11 74.7 207 30.0
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.1e-11 74.7 217 33.2
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 1.5e-11 74.3 169 39.1
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 1.5e-11 74.3 226 33.2
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 1.9e-11 73.9 229 38.0
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 2.5e-11 73.6 198 32.8
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 4.3e-11 72.8 207 30.0
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 7.3e-11 72.0 207 37.7
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 7.3e-11 72.0 233 32.2
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 1.2e-10 71.2 214 29.4
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 1.2e-10 71.2 214 29.4
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 1.2e-10 71.2 230 39.1
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 1.6e-10 70.9 211 31.3
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 1.6e-10 70.9 219 32.9
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 1.0e-09 68.2 168 33.9
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 1.0e-09 68.2 225 27.6
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 1.0e-09 68.2 235 38.3
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 1.4e-09 67.8 232 28.9
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 1.4e-09 67.8 222 27.0
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 1.4e-09 67.8 264 36.0
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 1.8e-09 67.4 81 53.1
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.8e-09 67.4 221 28.1
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 2.3e-09 67.0 222 28.8
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 2.3e-09 67.0 226 31.9
Nn1g04167 Nelumbo nucifera HOM05D007784 ORTHO05D008654 3.1e-09 66.6 230 27.8
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 3.1e-09 66.6 217 28.1
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 8.9e-09 65.1 233 40.8
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 8.9e-09 65.1 204 39.2
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 1.2e-08 64.7 241 27.4
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 1.2e-08 64.7 221 36.2
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 1.5e-08 64.3 248 28.6
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.5e-08 64.3 248 28.6
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.5e-08 64.3 215 34.9
ECA234G3343 Erigeron canadensis HOM05D007784 ORTHO05D008654 2.6e-08 63.5 167 37.1
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 2.6e-08 63.5 224 29.9
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 3.4e-08 63.2 184 37.0
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 5.8e-08 62.4 220 27.7
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 7.5e-08 62.0 248 28.6
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 1.3e-07 61.2 279 26.9
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 1.7e-07 60.8 278 27.7
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 1.7e-07 60.8 278 27.7
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 1.7e-07 60.8 278 27.7
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 3.7e-07 59.7 277 26.0
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.9e-07 59.3 224 31.7
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 8.3e-07 58.5 221 29.4
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 8.3e-07 58.5 221 29.4
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 1.1e-06 58.2 235 28.1
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 1.4e-06 57.8 243 30.0
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 1.4e-06 57.8 83 44.6
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 1.9e-06 57.4 272 26.1
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 1.9e-06 57.4 272 27.6


User provided reference genes

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