Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 6.0e-156 555.1 532 100.0
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 3.7e-105 386.3 505 78.8
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.0e-99 366.3 532 58.1
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.1e-96 356.7 514 64.8
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.7e-94 350.9 514 76.8
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 2.1e-92 344.0 509 75.2
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.8e-91 340.9 509 77.2
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 3.7e-89 333.2 511 76.1
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 4.8e-89 332.8 505 77.6
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 6.3e-89 332.4 509 76.6
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 7.0e-88 328.9 519 70.7
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-87 327.8 508 75.0
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.5e-87 326.6 516 73.1
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 4.5e-87 326.2 496 77.0
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.9e-86 323.6 505 76.4
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 3.8e-86 323.2 510 76.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 6.5e-86 322.4 507 73.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 7.2e-85 318.9 508 74.0
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 4.7e-84 316.2 506 76.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 6.1e-84 315.8 516 72.7
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 8.0e-84 315.5 507 68.2
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.3e-83 313.9 507 72.0
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 5.2e-83 312.8 509 74.7
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 8.8e-83 312.0 516 62.8
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.2e-82 311.6 509 71.9
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 2.6e-82 310.5 507 72.8
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.4e-82 309.7 507 74.6
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 5.7e-82 309.3 513 72.3
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 9.8e-82 308.5 516 69.6
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 3.7e-81 306.6 505 73.7
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 6.3e-81 305.8 515 75.1
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.3e-81 305.8 509 70.9
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 1.1e-80 305.1 498 75.3
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.4e-80 304.7 508 72.0
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 5.9e-79 299.3 512 71.3
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 7.7e-79 298.9 510 74.1
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 5.0e-78 296.2 519 75.1
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.1e-77 295.0 514 71.0
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 5.6e-77 292.7 557 65.9
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.7e-76 289.7 519 63.4
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 8.0e-76 288.9 539 69.0
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 8.0e-76 288.9 511 68.1
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 8.3e-73 278.9 503 75.7
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 9.2e-72 275.4 510 68.8
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 3.5e-71 273.5 512 65.6
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 4.6e-71 273.1 509 73.1
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 6.6e-70 269.2 510 66.9
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 1.9e-69 267.7 507 67.1
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.3e-67 260.8 516 64.3
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 2.3e-67 260.8 496 70.0
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 3.1e-67 260.4 513 66.5
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 4.0e-67 260.0 506 69.0
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 5.2e-67 259.6 498 70.5
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 8.9e-67 258.8 513 67.3
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 9.8e-66 255.4 564 61.3
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.7e-65 254.6 501 65.9
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.7e-65 254.6 514 66.5
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 2.2e-65 254.2 519 62.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 5.4e-64 249.6 498 67.7
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 5.4e-64 249.6 502 62.2
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 5.4e-64 249.6 443 77.0
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.6e-63 248.1 505 69.1
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.6e-63 248.1 286 65.7
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 3.0e-62 243.8 505 55.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 5.0e-62 243.0 490 74.9
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.5e-61 241.5 513 66.7
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.3e-61 240.4 507 63.7
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 7.3e-61 239.2 285 61.8
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.8e-59 234.6 499 67.3
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 2.3e-59 234.2 515 65.8
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 4.0e-59 233.4 465 72.3
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.9e-59 232.3 240 60.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.0e-58 231.1 541 64.3
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 3.4e-58 230.3 512 58.2
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 4.4e-58 229.9 500 67.4
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.4e-56 224.9 510 65.5
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.9e-56 224.6 506 65.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.2e-56 223.8 586 59.4
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.9e-53 214.5 533 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 5.6e-53 213.0 525 61.3
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 5.6e-53 213.0 513 62.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 4.0e-51 206.8 497 65.2
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.6e-50 204.1 521 56.4
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 3.4e-50 203.8 276 60.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 7.6e-50 202.6 513 61.0
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.6e-50 202.6 497 64.8
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 1.7e-49 201.4 506 62.3
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.4e-48 198.4 500 63.4
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 4.1e-48 196.8 500 64.2
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 7.1e-48 196.1 502 65.5
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.7e-47 194.1 489 63.4
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 2.7e-47 194.1 600 56.2
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.6e-47 193.4 511 55.2
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 8.6e-46 189.1 280 56.4
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 3.3e-45 187.2 511 58.3
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 3.8e-41 173.7 528 57.2
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 4.9e-41 173.3 519 61.3
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 3.2e-40 170.6 494 36.8
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 4.2e-40 170.2 508 60.6
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 4.5e-34 150.2 180 61.1
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 9.9e-34 149.1 477 61.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.9e-33 147.5 148 54.7
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 4.9e-33 146.7 520 61.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.9e-29 134.8 147 52.4
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 6.2e-28 129.8 153 47.1
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.6e-23 115.2 75 69.3
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 2.1e-23 114.8 76 73.7
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 2.1e-23 114.8 75 74.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 2.1e-23 114.8 75 74.7
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 3.5e-23 114.0 276 30.8
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 1.3e-22 112.1 75 73.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.9e-22 110.5 99 59.6
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.6e-20 105.1 121 60.3
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.2e-15 89.0 60 66.7
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 5.7e-13 80.1 148 41.9
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 9.6e-13 79.3 54 64.8
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-11 75.5 76 46.1
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 5.5e-08 63.5 39 74.4


User provided reference genes

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