Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 3.8e-66 254.6 121 100.0
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.7e-11 72.4 55 70.9
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 6.0e-11 71.2 54 66.7
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 7.8e-11 70.9 54 68.5
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 2.3e-10 69.3 51 68.6
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 3.0e-10 68.9 52 65.4
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 3.0e-10 68.9 51 68.6
AUR62029333 Chenopodium quinoa HOM05D023068 ORTHO05D009506 6.6e-10 67.8 112 42.9
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 6.6e-10 67.8 51 64.7
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 1.5e-09 66.6 101 46.5
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 7.3e-09 64.3 51 62.7
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 9.5e-09 63.9 53 64.2
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.2e-08 63.5 55 61.8
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.2e-08 63.5 52 65.4
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 1.2e-08 63.5 54 59.3
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 1.6e-08 63.2 97 43.3
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 1.6e-08 63.2 52 63.5
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 2.1e-08 62.8 60 56.7
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 2.8e-08 62.4 47 63.8
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 2.8e-08 62.4 52 65.4
Ah.04g165060 Amaranthus hybridus HOM05D023068 ORTHO05D009506 3.6e-08 62.0 66 54.5
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 3.6e-08 62.0 80 48.8
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 3.6e-08 62.0 52 65.4
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 4.7e-08 61.6 54 64.8
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 4.7e-08 61.6 103 39.8
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 1.4e-07 60.1 61 54.1
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 1.4e-07 60.1 54 61.1
Ah.06g183770 Amaranthus hybridus HOM05D023068 ORTHO05D009506 2.3e-07 59.3 80 46.2
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.3e-07 59.3 55 56.4
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 2.3e-07 59.3 55 56.4
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 3.1e-07 58.9 47 61.7
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 3.1e-07 58.9 107 40.2
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 4.0e-07 58.5 47 61.7
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 4.0e-07 58.5 115 37.4
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.0e-07 58.5 55 54.5
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.0e-07 58.5 53 50.9
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 4.0e-07 58.5 53 50.9
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 5.2e-07 58.2 43 69.8
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.2e-07 58.2 53 50.9
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 8.9e-07 57.4 115 36.5
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.9e-07 57.4 115 36.5
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 8.9e-07 57.4 61 54.1
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 8.9e-07 57.4 57 59.6
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 1.2e-06 57.0 46 63.0
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 1.5e-06 56.6 53 58.5
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.5e-06 56.6 54 59.3
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.5e-06 56.6 115 35.7
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 1.5e-06 56.6 49 61.2
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 1.5e-06 56.6 52 63.5
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 2.0e-06 56.2 117 39.3
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.0e-06 56.2 115 36.5
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 3.4e-06 55.5 40 67.5
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 4.4e-06 55.1 38 73.7
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 4.4e-06 55.1 55 60.0
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 5.8e-06 54.7 42 61.9
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 7.6e-06 54.3 55 58.2
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 7.6e-06 54.3 51 54.9
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 9.9e-06 53.9 55 54.5
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 9.9e-06 53.9 40 67.5
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 9.9e-06 53.9 57 54.4


User provided reference genes

Program Settings