Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.9e-142 509.2 267 100.0
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 7.5e-107 391.0 272 69.1
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.4e-105 386.7 267 68.2
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 2.0e-104 382.9 230 76.1
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 2.0e-104 382.9 279 67.0
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.7e-104 382.5 272 66.9
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.7e-103 379.8 274 66.4
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 2.3e-103 379.4 275 71.3
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 3.9e-103 378.6 230 76.1
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 6.6e-103 377.9 279 65.9
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 6.6e-103 377.9 275 65.1
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.1e-102 377.1 271 66.8
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 3.3e-102 375.6 230 74.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 3.3e-102 375.6 230 73.5
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 5.6e-102 374.8 230 72.6
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 5.6e-102 374.8 230 74.3
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 7.3e-102 374.4 232 74.6
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 7.3e-102 374.4 230 74.3
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.6e-101 373.2 230 74.3
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.6e-101 372.1 269 66.5
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 4.7e-101 371.7 230 73.9
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 4.7e-101 371.7 275 64.4
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.2e-101 371.3 271 65.3
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 6.2e-101 371.3 267 67.4
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.1e-101 370.9 271 65.3
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 8.1e-101 370.9 271 65.3
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.0e-100 368.6 272 65.4
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 5.2e-100 368.2 230 73.5
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 6.8e-100 367.9 230 74.3
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 4.4e-99 365.2 230 72.2
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 5.8e-99 364.8 232 73.7
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 5.8e-99 364.8 268 63.8
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 5.8e-99 364.8 267 64.8
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.8e-99 364.0 231 72.3
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.3e-98 363.6 270 64.1
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 1.3e-98 363.6 230 72.2
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.7e-98 363.2 230 73.0
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.7e-98 363.2 275 63.3
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.9e-98 362.5 230 72.6
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.9e-98 362.5 275 63.6
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 4.9e-98 361.7 270 63.0
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 4.9e-98 361.7 230 73.0
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 6.4e-98 361.3 232 73.3
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 6.4e-98 361.3 275 63.3
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 8.3e-98 360.9 273 66.7
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.1e-97 360.5 230 71.7
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.4e-97 360.1 272 63.6
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.9e-97 359.8 230 72.2
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.9e-97 359.8 274 60.9
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.4e-97 359.4 232 72.8
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 3.2e-97 359.0 274 60.9
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 4.1e-97 358.6 272 63.6
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 9.2e-97 357.5 230 71.3
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.2e-96 357.1 269 64.3
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.6e-96 356.7 273 64.5
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 2.1e-96 356.3 230 72.2
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.5e-96 355.5 269 62.8
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.5e-96 355.5 272 63.6
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 4.6e-96 355.1 233 73.0
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 6.0e-96 354.8 230 70.0
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 6.0e-96 354.8 268 61.2
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 6.0e-96 354.8 230 69.1
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 6.0e-96 354.8 230 69.1
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 7.8e-96 354.4 277 62.1
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 7.8e-96 354.4 230 71.7
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.8e-96 354.4 230 70.0
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 7.8e-96 354.4 231 72.3
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-95 354.0 269 62.5
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-95 354.0 269 62.5
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 1.0e-95 354.0 273 61.2
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.9e-95 352.1 230 69.6
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 3.9e-95 352.1 230 69.6
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 5.1e-95 351.7 230 68.7
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.6e-95 351.3 274 62.4
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 6.6e-95 351.3 273 62.3
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 8.6e-95 350.9 303 59.1
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 8.6e-95 350.9 271 60.1
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.5e-94 350.1 238 68.9
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.9e-94 349.7 269 63.6
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.3e-94 349.0 274 61.3
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 4.3e-94 348.6 230 68.7
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 9.5e-94 347.4 230 70.0
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 9.5e-94 347.4 237 68.8
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.1e-93 346.3 231 70.6
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-93 345.5 284 59.2
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-93 345.5 284 59.2
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.6e-93 345.5 230 69.1
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 4.7e-93 345.1 282 59.9
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 4.7e-93 345.1 282 59.9
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 4.7e-93 345.1 275 61.1
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 4.7e-93 345.1 281 59.4
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 6.2e-93 344.7 283 59.7
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.2e-93 344.7 231 70.1
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.2e-93 344.7 231 70.1
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-92 344.0 281 60.1
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.1e-92 344.0 231 72.7
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.1e-92 344.0 231 70.1
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.8e-92 343.2 281 58.7
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.8e-92 343.2 281 59.8
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.8e-92 343.2 280 60.0
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.3e-92 342.8 278 59.7
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 3.1e-92 342.4 281 58.4
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 3.1e-92 342.4 282 59.2
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 3.1e-92 342.4 281 59.1
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.1e-92 342.4 231 69.3
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 4.0e-92 342.0 281 60.1
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 8.9e-92 340.9 283 59.4
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 8.9e-92 340.9 283 59.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 8.9e-92 340.9 281 58.7
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 8.9e-92 340.9 230 68.7
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-91 340.5 281 59.8
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.2e-91 340.5 281 59.8
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.2e-91 340.5 271 60.5
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.5e-91 340.1 281 59.4
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 2.0e-91 339.7 281 58.7
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 2.0e-91 339.7 230 66.5
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 2.0e-91 339.7 271 60.5
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.0e-91 339.7 281 58.7
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.6e-91 339.3 282 58.9
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.4e-91 339.0 239 66.5
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 5.8e-91 338.2 239 65.7
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.7e-90 336.7 275 66.5
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.2e-90 336.3 283 57.6
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 4.9e-90 335.1 268 59.0
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 6.4e-90 334.7 283 57.2
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.4e-89 332.8 278 57.2
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 3.2e-89 332.4 239 65.3
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 7.1e-89 331.3 272 60.3
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.6e-88 330.1 230 67.0
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 2.3e-87 326.2 279 58.4
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 3.9e-87 325.5 230 63.5
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.5e-86 323.6 272 58.1
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.5e-86 323.6 287 55.4
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.2e-85 320.5 231 64.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.4e-84 317.0 285 55.1
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 2.4e-84 316.2 267 59.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 2.6e-83 312.8 268 55.6
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.6e-83 312.8 232 65.5
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.9e-82 308.5 230 63.0
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 4.2e-81 305.4 232 62.5
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.6e-80 302.0 230 64.8
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.7e-79 300.1 230 64.3
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 9.6e-78 294.3 185 73.5
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.6e-77 293.5 229 59.0
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.4e-76 290.4 219 59.8
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.4e-74 281.2 243 55.6
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 3.0e-71 272.7 278 50.0
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 6.6e-71 271.6 269 51.3
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 3.6e-69 265.8 198 61.6
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.2e-65 252.3 236 51.7
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 2.5e-62 243.0 192 58.3
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 5.8e-59 231.9 233 47.6
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 1.3e-58 230.7 186 57.5
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 4.3e-54 215.7 141 71.6
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 2.4e-52 209.9 234 42.3
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 8.7e-47 191.4 151 58.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.5e-46 190.7 153 58.8
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.5e-46 189.9 155 60.6
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.2e-45 184.9 236 43.2
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.5e-41 172.2 130 63.8
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 7.2e-41 171.8 206 41.3
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 3.3e-38 162.9 234 35.0
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.4e-33 147.5 136 55.9
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.4e-33 147.5 136 55.9
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.4e-33 147.5 136 55.9
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.1e-20 104.8 113 47.8
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-20 102.8 111 39.6
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.5e-17 93.6 74 59.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 9.1e-12 75.1 137 32.8


User provided reference genes

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